Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics
Maintained by Julie Aubert, Toby Dylan Hocking, Nathalie Vialaneix · view source ↗
219
Packages
11
Core
2022
Tracked since
Recent additions and removals
Packages
| Package | Downloads 30d | Doc coverage | Since |
|---|---|---|---|
| ACNE | 447 | – | 2024-03 |
| ActivePathways | 605 | 100% | 2022-10 |
| ADAPTS | 673 | 100% | 2022-10 |
| adjclust | 624 | 100% | 2023-02 |
| agvgd | 442 | 94% | 2022-10 |
| alakazam | 2,455 | 100% | 2022-10 |
| Allspice | 383 | 100% | 2024-09 |
| ampir | 483 | 100% | 2022-10 |
| AnnotationBustR | 1,435 | 100% | 2022-10 |
| aroma.cn | 468 | – | 2022-10 |
| babelgene | 21,775 | 100% | 2022-10 |
| BarcodingR | 519 | 100% | 2022-10 |
| BASiNET | 387 | 100% | 2022-10 |
| bayefdr | 405 | 100% | 2022-10 |
| BED | 547 | 100% | 2022-10 |
| BiasCorrector | 389 | 100% | 2022-10 |
| bio3d | 2,471 | – | 2022-10 |
| BioInsight | 429 | 100% | 2022-10 |
| biomartrcore | 1,206 | 100% | 2022-11 |
| bioseq | 573 | 100% | 2022-10 |
| BRINDA | 364 | 100% | 2022-10 |
| Cascade | 761 | 100% | 2022-10 |
| CascadeData | 449 | – | 2022-10 |
| CB2 | 512 | 100% | 2022-10 |
| cbioportalR | 577 | 98% | 2022-10 |
| CePa | 585 | 100% | 2022-10 |
| CeRNASeek | 366 | – | 2022-10 |
| ChemoSpeccore | 1,153 | 100% | 2022-10 |
| chromoMap | 447 | 100% | 2022-10 |
| clustermole | 767 | 100% | 2022-10 |
| compas | 291 | 100% | 2022-10 |
| conos | 1,038 | 100% | 2022-10 |
| cp4p | 413 | – | 2022-10 |
| cubfits | 486 | 100% | 2022-10 |
| depthTools | 643 | – | 2022-11 |
| desiR | 316 | – | 2022-11 |
| DGEobj | 525 | 100% | 2022-11 |
| DGEobj.utils | 498 | 100% | 2022-11 |
| DiffCorr | 619 | 100% | 2022-11 |
| diffEnrich | 368 | 100% | 2022-11 |
| DiPALM | 461 | – | 2023-01 |
| directPA | 511 | 100% | 2023-01 |
| DIscBIO | 428 | 100% | 2023-01 |
| DiscreteFDR | 480 | 100% | 2023-01 |
| DRaWR | 330 | 100% | 2023-01 |
| driveR | 428 | 100% | 2023-01 |
| DRomics | 530 | 100% | 2023-01 |
| dsb | 639 | 67% | 2023-01 |
| dynwrap | 618 | 100% | 2023-01 |
| DysPIA | 323 | 100% | 2023-01 |
| DysPIAData | 278 | – | 2023-01 |
| EMMIXgene | 371 | 100% | 2022-11 |
| enveomics.R | 604 | 100% | 2022-11 |
| erah | 431 | 100% | 2022-11 |
| FiRE | 305 | – | 2023-01 |
| flippant | 494 | 100% | 2023-12 |
| ftrCOOL | 334 | 100% | 2023-01 |
| func2vis | 360 | – | 2023-01 |
| GANPA | 307 | 100% | 2023-01 |
| GANPAdata | 267 | – | 2024-01 |
| GeneCycle | 523 | – | 2022-12 |
| geneExpressionFromGEO | 427 | – | 2022-12 |
| GeneNetcore | 1,230 | 100% | 2022-12 |
| geno2proteo | 337 | – | 2022-12 |
| GenomicTools.fileHandlercore | 331 | 100% | 2022-12 |
| genoPlotR | 569 | 100% | 2022-12 |
| gggenes | 6,384 | 100% | 2022-12 |
| glmmSeq | 483 | 100% | 2022-12 |
| gprofiler2 | 5,314 | 100% | 2022-12 |
| graphsim | 509 | 100% | 2022-12 |
| GSA | 1,660 | 100% | 2022-12 |
| hgnc | 366 | 100% | 2024-01 |
| hommel | 787 | 100% | 2022-12 |
| hsstan | 352 | 100% | 2022-12 |
| HTSCluster | 536 | 100% | 2022-12 |
| ICBioMark | 352 | 100% | 2022-12 |
| iCellR | 565 | 100% | 2022-12 |
| IMIX | 339 | 100% | 2022-12 |
| immunarch | 942 | 100% | 2024-03 |
| imp4p | 822 | – | 2022-12 |
| imputeLCMD | 2,898 | 100% | 2022-12 |
| imsig | 326 | 100% | 2022-12 |
| integIRTy | 457 | 100% | 2022-12 |
| interep | 328 | 100% | 2022-12 |
| ioncopy | 295 | 100% | 2022-12 |
| iq | 947 | – | 2022-12 |
| JBrowseR | 411 | 94% | 2022-12 |
| JSparO | 233 | 100% | 2022-12 |
| KRIS | 321 | 100% | 2022-12 |
| krm | 350 | 100% | 2022-12 |
| leapp | 347 | 100% | 2022-12 |
| lilikoi | 468 | 100% | 2022-12 |
| lineup | 381 | 100% | 2022-12 |
| lineup2 | 300 | 100% | 2022-12 |
| lmQCM | 321 | 100% | 2022-12 |
| LSPFP | 288 | 100% | 2022-12 |
| LUCIDus | 507 | 100% | 2022-12 |
| maGUI | 371 | – | 2022-12 |
| Map2NCBI | 386 | 100% | 2022-12 |
| markerpen | 304 | 100% | 2022-12 |
| MCMC.qpcr | 344 | – | 2022-12 |
| metaboData | 398 | 90% | 2022-12 |
| MetabolicSurv | 358 | 100% | 2022-12 |
| MetabolomicsBasics | 427 | 100% | 2022-12 |
| metaMA | 397 | 100% | 2022-12 |
| metaRNASeq | 351 | 100% | 2022-12 |
| MetSizeR | 337 | 100% | 2022-12 |
| mi4p | 402 | 100% | 2022-12 |
| miic | 582 | 100% | 2022-12 |
| MINTplates | 239 | 100% | 2022-12 |
| MiRNAQCD | 317 | 100% | 2022-12 |
| mpm | 428 | 100% | 2022-12 |
| mpmi | 371 | 100% | 2022-12 |
| msigdbr | 28,935 | 100% | 2022-12 |
| mutSignatures | 393 | 100% | 2022-12 |
| NACHO | 595 | 100% | 2022-12 |
| nanostringr | 577 | 100% | 2022-12 |
| NBPSeq | 428 | 100% | 2022-12 |
| net4pg | 295 | 100% | 2022-12 |
| netgsa | 373 | 100% | 2022-12 |
| networkABC | 300 | 100% | 2022-12 |
| NewmanOmics | 432 | 100% | 2022-12 |
| o2plsdacore | 418 | 100% | 2022-11 |
| OlinkAnalyze | 1,944 | 100% | 2025-04 |
| OmicNavigator | 355 | 100% | 2022-11 |
| omicwas | 334 | 100% | 2022-12 |
| omu | 359 | 100% | 2022-11 |
| optBiomarker | 249 | – | 2022-11 |
| OptCirClust | 287 | 100% | 2022-11 |
| packMBPLSDA | 281 | 100% | 2022-11 |
| pagoda2core | 1,316 | 100% | 2022-11 |
| parmigene | 614 | 100% | 2022-11 |
| pathfindR | 866 | 100% | 2022-11 |
| pathfindR.data | 516 | – | 2022-11 |
| Patterns | 560 | 100% | 2022-11 |
| pbm | 361 | 100% | 2022-11 |
| PeakError | 304 | – | 2022-11 |
| PeakSegDisk | 485 | 100% | 2022-11 |
| PeakSegJoint | 433 | – | 2024-01 |
| PeakSegOptimal | 316 | – | 2023-01 |
| permPATH | 413 | – | 2022-11 |
| phateR | 542 | 100% | 2022-11 |
| pinfsc50 | 3,394 | – | 2022-11 |
| PINSPlus | 692 | 100% | 2022-11 |
| PMAcore | 845 | 100% | 2022-11 |
| POD | 258 | 100% | 2022-11 |
| popPCR | 247 | 100% | 2022-11 |
| prioritylasso | 361 | 100% | 2022-11 |
| protti | 663 | 100% | 2022-11 |
| protViz | 509 | 100% | 2022-11 |
| prozor | 442 | 100% | 2022-11 |
| PSCBS | 1,107 | – | 2022-11 |
| PSSMCOOL | 282 | 100% | 2022-11 |
| ptm | 369 | 100% | 2022-11 |
| PTXQC | 495 | 100% | 2022-11 |
| pwrFDR | 349 | 94% | 2025-02 |
| rBiasCorrection | 520 | 100% | 2022-10 |
| RCircos | 581 | – | 2022-10 |
| RcmdrPlugin.depthTools | 773 | – | 2022-10 |
| read.gb | 407 | 100% | 2022-10 |
| Rediscover | 442 | 100% | 2022-10 |
| regnet | 345 | 100% | 2022-10 |
| RGBM | 378 | – | 2022-10 |
| RHclust | 365 | – | 2023-10 |
| riceidconverter | 295 | 100% | 2022-10 |
| RIdeogram | 644 | 100% | 2022-10 |
| RNAseqNet | 304 | 100% | 2022-11 |
| RNentropy | 434 | – | 2022-10 |
| RobustRankAggreg | 1,160 | 100% | 2022-10 |
| rPanglaoDB | 318 | 100% | 2022-10 |
| rSEA | 383 | 100% | 2022-10 |
| scBio | 350 | 100% | 2022-10 |
| sccore | 4,150 | 100% | 2022-10 |
| scINSIGHT | 291 | 100% | 2022-10 |
| scoper | 1,021 | 100% | 2022-10 |
| scTenifoldKnk | 3,657 | 100% | 2022-10 |
| scTenifoldNet | 4,063 | 100% | 2022-10 |
| seqgendiff | 528 | 100% | 2022-10 |
| seqinr | 19,770 | – | 2022-10 |
| Seuratcore | 61,761 | 99% | 2022-10 |
| SeuratObject | 49,858 | 95% | 2022-10 |
| SIBERG | 479 | 100% | 2022-10 |
| sigminer | 2,240 | 99% | 2022-10 |
| Signac | 5,401 | 100% | 2022-10 |
| SignacX | 363 | – | 2022-10 |
| sigora | 353 | 100% | 2022-10 |
| SIMMS | 319 | 100% | 2022-10 |
| singleCellHaystack | 430 | 100% | 2022-10 |
| slfm | 279 | 100% | 2022-10 |
| SMDIC | 394 | 100% | 2022-10 |
| SMVar | 286 | – | 2022-10 |
| solvebio | 467 | 100% | 2022-10 |
| sonicLength | 272 | 100% | 2022-10 |
| SoupX | 5,628 | 100% | 2022-10 |
| ssize.fdr | 395 | – | 2022-10 |
| supclust | 307 | 100% | 2022-10 |
| SurrogateRegression | 309 | 100% | 2022-10 |
| TailRank | 1,052 | 100% | 2022-09 |
| TCA | 460 | 100% | 2022-09 |
| TcGSA | 412 | 100% | 2022-09 |
| TGS | 281 | 100% | 2022-09 |
| tidyestimate | 1,393 | 100% | 2022-09 |
| tinyarray | 2,590 | 100% | 2022-09 |
| Tmisc | 510 | 87% | 2022-09 |
| tmod | 474 | 100% | 2022-09 |
| topologyGSA | 426 | 100% | 2022-09 |
| toprdata | 265 | – | 2022-09 |
| treefit | 350 | 100% | 2022-09 |
| VALERIE | 296 | 100% | ≥ 2022-09 |
| valr | 1,759 | 100% | ≥ 2022-09 |
| VAM | 686 | 100% | ≥ 2022-09 |
| vhica | 349 | 100% | ≥ 2022-09 |
| volcano3D | 551 | 100% | ≥ 2022-09 |
| WebGestaltRcore | 851 | 100% | ≥ 2022-09 |
| WGCNAcore | 26,661 | – | 2022-11 |
| whitening | 580 | 100% | ≥ 2022-09 |
| wilson | 1,265 | 100% | ≥ 2022-09 |
| wrMisc | 1,321 | 100% | ≥ 2022-09 |
| wrProteocore | 1,024 | 100% | ≥ 2022-09 |
Membership from the CRAN Task Views project. A “≥ YYYY-MM” join date means membership predates the view repo’s first observed commit.