R Observatory: Metrics for DiscreteFDR version 2.1.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

DiscreteFDR

2.1.1Package record

FDR Based Multiple Testing Procedures with Adaptation for Discrete Tests

2packages depend

4.5Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Florian JungeCRAN page ↗GitHub ↗Issues ↗

Implementations of the multiple testing procedures for discrete tests described in the paper Döhler, Durand and Roquain (2018) "New FDR bounds for discrete and heterogeneous tests" doi:10.1214/18-EJS1441. The main procedures of the paper (HSU and HSD), their adaptive counterparts (AHSU and AHSD), and the HBR variant are available and are coded to take as input the results of a test procedure from package 'DiscreteTests', or a set of observed p-values and their discrete support under their nulls. A shortcut function to obtain such p-values and supports is also provided, along with a wrapper allowing to apply discrete procedures directly to data.

Changes in 2.1.1

Replaced deprecated functions used by fast.Discrete() and in the vignettes.

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("DiscreteFDR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("DISOhda/DiscreteFDR")

Development version from DISOhda/DiscreteFDR. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-discretefdr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-DiscreteFDR

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-DiscreteFDR

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 5.0 min · r-devel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-04-22
ERROR13 OK, 1 ERROR2026-04-18
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 2.1.1

READMENoVignettesYes · 4 · dynamicNEWSYes · 100% structured · mentions 2.1.1Citation fileNoWebsitenot declared in DESCRIPTION

Help pages: 16 (1 internal)includes a package overview page
Examples that run: 100%13 run in a plain check
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 89%
Help pages citing references: 44%

Vignettes (4)

How these are measured

Downloads

4.5K

CRAN downloads in the past year

Rank #5,050 · ~12/day · ~373/mo

Releases R versions

Daily download trend is not available in this view yet.

48430 days

1.6K90 days

4.5K1 year

Compare downloads with other packages →

Also on408 r2u5 autocran31 c2d4u

How downloads are counted

Repository

disohda/discretefdr ↗Account: DISOhda

4Stars

0Forks

0Open issues

0Open PRs

3Releases

119Commits

1Commit identities

119 commits · Last activity 2026-02-13 · 0% stars, 30d

Responsiveness

How these are sampled

PRs merged (all time): 100%
Median days to close, 50 most recently updated closed issues: not measured
Median days to close, 50 most recently updated closed PRs: 0

Stars over time

2024-12-04 · 32026-07-07 · 4

How these are measured

PracticesBeta

3 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/disohda/discretefdr on 2026-10-18.

Continuous integration (1)

GitHub Actions

CRAN release process (1)

cran-comments.md

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

11 external dependencies (excludes base and recommended)

Installing DiscreteFDR adds 18 packages (12 with compiled code, 8.0 MB of source tarballs). Heaviest: Rcpp 1.8 MB, RcppArmadillo 1.0 MB, vctrs 1.0 MB.

Depends (1)

R >= 3.00

Imports (5)

Rcpp DiscreteTests lifecycle checkmate DiscreteDatasets

LinkingTo (2)

Rcpp RcppArmadillo

Suggests (4)

rmarkdown knitr R.rsp kableExtra

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

2direct

0indirect

Imports 2

Depends, Imports or LinkingTo, most downloaded first

FDX DiscreteFWER

How these are counted

Code & Tests

People & History

People (5)

Florian Junge

Author, Contributor, Maintainer since 1.3 (2019)

Guillermo Durand

Author, Contributor

Sebastian Döhler

Author, Contributor

Christina Kihn

Contributor · added in 1.3.7

Etienne Roquain

Contributor

Previously maintained by Guillermo Durand (1.0 to 1.2).

Releases (15)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
2.1.1Latest
record
2026-02-13 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
2.1.0
record
2024-12-14 · diff ↗ ·
added 1 export
DBY
2.0.1
record
2024-10-24 · diff ↗ ·
removed 1 export
match.pvals
2.0.0
record
2024-07-08 · diff ↗ ·
removed 6 exports
kernel_ADBH_crit, kernel_ADBH_fast, kernel_DBH_crit, kernel_DBH_fast, kernel_DBR_crit, kernel_DBR_fast

added 2 exports
direct.discrete.BH, generate.pvalues
R
R 4.4.0 released · 2024-04-24
1.3.7
record
2024-02-09 · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
1.3.6
record
2021-09-03 · diff ↗
1.3.5
record
2021-05-25 · diff ↗
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
1.3-4
record
2020-02-14 · diff ↗
1.3-3
record
2019-11-16 · diff ↗

Show 8 earlier eventsHide 8 earlier events

1.3-2
record
2019-11-13 · diff ↗
1.3-1
record
2019-07-14 · diff ↗
1.3
record
2019-07-12 · diff ↗ ·
removed 8 exports
build.stepfuns, kernel.ADBH.crit, kernel.ADBH.fast, kernel.DBH.crit, kernel.DBH.fast, kernel.DBR.crit, kernel.DBR.fast, short.eff

added 6 exports
kernel_ADBH_crit, kernel_ADBH_fast, kernel_DBH_crit, kernel_DBH_fast, kernel_DBR_crit, kernel_DBR_fast
R
R 3.6.0 released · 2019-04-26
1.2
record
2019-01-07 · diff ↗ ·
removed 1 export
kernel.DBH

added 3 exports
discrete.BH, kernel.DBH.crit, kernel.DBH.fast
1.1
record
2018-09-12 · diff ↗ ·
added 1 export
fast.Discrete
1.0
record
2018-07-10
R
R 3.5.0 released · 2018-04-23

Package metadata

First published: 2018-07-10
Total releases: 15 / 8 yrs
License: GPL-3 OSI · relicensed from MIT + file LICENSE in 1.3.6
Minimum R: ≥ 3.00
Download size: 972 KB

Appears in task views

Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("DiscreteFDR")

Format

Junge, F., Durand, G., Döhler, S., Kihn, C., & Roquain, E. (2026). DiscreteFDR: FDR Based Multiple Testing Procedures with Adaptation for Discrete Tests (Version 2.1.1) [Computer software]. https://doi.org/10.32614/CRAN.package.DiscreteFDR

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for DiscreteFDR version 2.1.1 [Data set]. HJJB, LLC. Data release v2026-10-21. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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