This package was removed from CRAN on 2026-05-08. Its history is shown below.

Reason: email to the maintainer is undeliverable

Details below reflect version 0.0.6, its last release before removal.

semmcmc

0.0.6

Bayesian Structural Equation Modeling in Multiple Omics Data Integration

0packages depend

1.5Kdownloads / year

–test coverage

–checks pass

Overview

About

Maintained by Arnab Maity2 releasesCRAN page ↗

Provides Markov Chain Monte Carlo (MCMC) routine for the structural equation modelling described in Maity et. al. (2020) doi:10.1093/bioinformatics/btaa286. This MCMC sampler is useful when one attempts to perform an integrative survival analysis for multiple platforms of the Omics data where the response is time to event and the predictors are different omics expressions for different platforms.

Install

R (source archive)Ubuntu (r2u)openSUSE (OBS)

url <- "https://cran.r-project.org/src/contrib/Archive/semmcmc/semmcmc_0.0.6.tar.gz"
pkgFile <- "semmcmc_0.0.6.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.0.6) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-semmcmc

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-semmcmc

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 6 wordsVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 100%

Downloads

1.5K

CRAN downloads in the past year

Rank #24,502 · ~4/day · ~128/mo

Releases R versions

Daily download trend is not available in this view yet.

030 days

090 days

1.5K1 year

Compare downloads with other packages →

Also on94 r2u13 autocran25 c2d4u

Dependencies

Declared dependencies

1 external dependency (excludes base and recommended)

Depends (1)

R >= 4.0

Imports (2)

MASSmsm

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

Code Composition

R 465 (70%)Rd 198 (30%)

Code characteristics

Cyclomatic complexity: 7.0 median / 7 max

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

1 1 exported

Complexity

7 avg / 7 max

Call network

1 nodes / 0 edges

Test coverage has not been measured for this package yet; nodes fall back to a neutral fill.

Call graph

Open call graph →

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (5)

Maintainer (1)

Arnab Maity

Author, Maintainer

Authors (5)

Arnab Maity

Author, Maintainer

Sang Chan Lee

Author

Bani K. Mallick

Author

Samsiddhi Bhattacharjee

Author

Nidhan K. Biswas

Author

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

archivedRemoved from CRAN
2026-05-08
email to the maintainer is undeliverable
R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
0.0.6
2021-05-13 · diff ↗
0.0.4
2021-04-26
R
R 4.0.0 released · 2020-04-24

Package metadata

Total releases: 2
License: GPL-3 OSI
Minimum R: ≥ 4.0
Download size: 6.6 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

Report a problem with this page →