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PeakSegJoint

Joint Peak Detection in Several ChIP-Seq Samples

v2024.12.4 · Dec 4, 2024 · GPL-3
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Description

Jointly segment several ChIP-seq samples to find the peaks which are the same and different across samples. The fast approximate maximum Poisson likelihood algorithm is described in "PeakSegJoint: fast supervised peak detection via joint segmentation of multiple count data samples" <doi:10.48550/arXiv.1506.01286> by TD Hocking and G Bourque.

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14 OK
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r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Dependency Network

Dependencies Reverse dependencies PeakError penaltyLearning PeakSegJoint

Version History

new 2024.12.4 Mar 10, 2026
updated 2024.12.4 ← 2024.10.1 diff Dec 3, 2024
updated 2024.10.1 ← 2024.6.27 diff Oct 1, 2024
updated 2024.6.27 ← 2024.1.24 diff Jun 26, 2024
updated 2024.1.24 ← 2023.4.24 diff Jan 23, 2024
updated 2023.4.24 ← 2022.4.6 diff Apr 24, 2023
updated 2022.4.6 ← 2018.10.3 diff Apr 6, 2022
updated 2018.10.3 ← 2018.01.09 diff Oct 2, 2018
updated 2018.01.09 ← 2017.08.11 diff Sep 30, 2018
new 2017.08.11 Aug 15, 2017