R Observatory: Metrics for ypssc version 1.1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2026-03-25. Its history is shown below.

Reason: issues were not corrected despite reminders

Details below reflect version 1.1.0, its last release before removal.

ypssc

1.1.0Package record

Yeast-Proteome Secondary-Structure Calculator

0packages depend

888downloads / year

–test coverage

–flavors OK

Overview

About

Maintained by Shashank KumbhareCRAN page ↗

An extension for 'NetSurfP-2.0' (Klausen et al. (2019) doi:10.1002/prot.25674) which is specifically designed to analyze the results of bottom-up-proteomics that is primarily analyzed with 'MaxQuant' (Cox, J., Mann, M. (2008) doi:10.1038/nbt.1511). This tool is designed to process a large number of yeast peptides that produced as a results of whole yeast cell-proteome digestion and provide a coherent picture of secondary structure of proteins.

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/ypssc/ypssc_1.1.0.tar.gz"
pkgFile <- "ypssc_1.1.0.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (1.1.0) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Status changes

NOTE5 OK, 9 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.1.0

READMENoVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 5 (1 internal)includes a package overview page
Examples that run: 0%4 never run
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 0%

How these are measured

Downloads

888

CRAN downloads in the past year

Rank #25,730 · ~2/day · ~74/mo

Releases R versions

Daily download trend is not available in this view yet.

030 days

090 days

8881 year

Compare downloads with other packages →

Also on53 r2u4 autocran52 c2d4u

How downloads are counted

Dependencies

Declared dependencies

9 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10

Imports (9)

spelling dplyr readxl stringr eulerr PeptidesutilssvDialogstcltk

LinkingTo (0)

none

Suggests (2)

rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (5)

Shashank Kumbhare

Sajad Tasharofi

Author, Copyright holder

Bent Petersen

Author

Morteza Khaledi

Author

Amir Shahmoradi

Author

Releases (2)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
archivedRemoved from CRAN
2026-03-25
issues were not corrected despite reminders
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
1.1.0
record
2021-11-27 · diff ↗
1.0.0
record
2021-11-19
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-11-19
Total releases: 2 / 5 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 2.10
Download size: 1.2 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("ypssc")

Format

Tasharofi, S., Kumbhare, S., Petersen, B., Khaledi, M., & Shahmoradi, A. (n.d.). ypssc: Yeast-Proteome Secondary-Structure Calculator (Version 1.1.0) [Computer software]. Retrieved October 25, 2026, from https://CRAN.R-project.org/package=ypssc

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for ypssc version 1.1.0 [Data set]. HJJB, LLC. Data release v2026-10-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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