R Observatory: Metrics for lmQCM version 0.2.4

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

lmQCM

0.2.4

An Algorithm for Gene Co-Expression Analysis

0packages depend

2.6Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Zhi HuangFirst published 2018-03-198 releasesCRAN page ↗GitHub ↗

Implementation based on Zhang, Jie & Huang, Kun (2014) doi:10.4137/CIN.S14021 Normalized ImQCM: An Algorithm for Detecting Weak Quasi-Cliques in Weighted Graph with Applications in Gene Co-Expression Module Discovery in Cancers. Cancer informatics, 13, CIN-S14021.

Install

R (CRAN)pak (dev)Ubuntu (r2u)

install.packages("lmQCM", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("huangzhii/lmQCM")

Development version from huangzhii/lmQCM. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-lmqcm

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

Slowest check: 4.4 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.01

not tracked

Coverage

100%

Documentation · exports

5

Dependencies · direct

Check history

OK2026-08-12
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-08-09
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-27
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 8 earlier snapshots

ERROR2026-06-21
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-05-05
11 OK · 0 NOTE · 0 WARNING · 2 ERROR · 0 FAILURE
OK2026-04-22
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 53 wordsVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

2.6K

CRAN downloads in the past year

Rank #15,642 · ~7/day · ~218/mo

Releases R versions

Daily download trend is not available in this view yet.

17930 days

68790 days

2.6K1 year

Compare downloads with other packages →

Also on106 r2u25 c2d4u

Repository

GitHub ↗ huangzhii/lmqcm

4Stars

1Forks

0Open issues

0Open PRs

0Releases

26Commits

1Contributors

26 commits · Last activity 2022-10-12

Stars over time

2023-05-30 · 32026-07-07 · 4

Repository practices

Upstream repositoryBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/huangzhii/lmqcm on 2026-08-23.

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

5 external dependencies (excludes base and recommended)

Depends (5)

genefilter Biobase progressstatsmethods

Imports (0)

none

LinkingTo (0)

none

Suggests (2)

devtools roxygen2

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (4)

Maintainer (1)

Zhi Huang

Author, Maintainer

Authors (4)

Author, Maintainer

Author, Contributor

Author, Contributor

Author, Contributor

Contributors (3)

Zhi Han

Author, Contributor

Kun Huang

Author, Contributor

Jie Zhang

Author, Contributor

Package Timeline

8 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.2.4Latest
2022-10-10 · current release · diff ↗
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
0.2.3
2021-03-03 · diff ↗
0.2.2
2021-01-14 · diff ↗
unarchivedReturned to CRAN
2021-01-14
archivedRemoved from CRAN
2020-08-12
check problems were not corrected in time
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
0.2.1
2019-03-12 · diff ↗
0.2.0
2019-02-20 · diff ↗
0.1.2
2018-09-12 · diff ↗

Show 4 earlier events

0.1.1
2018-06-28 · diff ↗
R
R 3.5.0 released · 2018-04-23
0.1.0
2018-03-19
R
R 3.4.0 released · 2017-04-21

Package metadata

First published: 2018-03-19
Total releases: 8 / 8 yrs
License: MIT + file LICENSE OSI
Download size: 6.3 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("lmQCM")

Format

Huang, Z., Han, Z., Huang, K., & Zhang, J. (2022). lmQCM: An Algorithm for Gene Co-Expression Analysis (Version 0.2.4) [Computer software]. https://doi.org/10.32614/CRAN.package.lmQCM

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for lmQCM version 0.2.4 [Data set]. HJJB, LLC. Data release v2026-08-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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