R Observatory: Metrics for lmQCM version 0.2.4

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

lmQCM

0.2.4Package record

An Algorithm for Gene Co-Expression Analysis

0packages depend

2.8Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Zhi HuangCRAN page ↗GitHub ↗Issues ↗

Implementation based on Zhang, Jie & Huang, Kun (2014) doi:10.4137/CIN.S14021 Normalized ImQCM: An Algorithm for Detecting Weak Quasi-Cliques in Weighted Graph with Applications in Gene Co-Expression Module Discovery in Cancers. Cancer informatics, 13, CIN-S14021.

Install

R (CRAN)pak (dev)Ubuntu (r2u)

install.packages("lmQCM", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("huangzhii/lmQCM")

Development version from huangzhii/lmQCM. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-lmqcm

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 4.3 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-10-14
ERROR12 OK, 1 ERROR2026-10-12
OK13 OK2026-08-12
ERROR12 OK, 1 ERROR2026-08-09
OK13 OK2026-08-05

Show 10 earlier changesHide 10 earlier changes

NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-27
ERROR12 OK, 1 ERROR2026-06-21
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK13 OK2026-05-09
ERROR11 OK, 2 ERROR2026-05-05
OK14 OK2026-04-22
ERROR13 OK, 1 ERROR2026-04-18
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.2.4

READMEYes · 53 wordsVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 4
Examples that run: 100%1 run in a plain check
Exported functions with examples: 25%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 0%

How these are measured

Downloads

2.8K

CRAN downloads in the past year

Rank #15,622 · ~8/day · ~229/mo

Releases R versions

Daily download trend is not available in this view yet.

32130 days

77490 days

2.8K1 year

Compare downloads with other packages →

Also on79 r2u46 c2d4u

How downloads are counted

Repository

huangzhii/lmqcm ↗Account: huangzhii

4Stars

1Forks

0Open issues

0Open PRs

0Releases

26Commits

1Commit identities

26 commits · Last activity 2022-10-12 · 0% stars, 30d

Responsiveness

How these are sampled

PRs merged (all time): not measured
Median days to close, 50 most recently updated closed issues: 61
Median days to close, 50 most recently updated closed PRs: not measured

Stars over time

2023-05-30 · 32026-07-07 · 4

How these are measured

PracticesBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/huangzhii/lmqcm on 2026-10-11.

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

5 external dependencies (excludes base and recommended)

Installing lmQCM adds 11 packages (4 with compiled code, 2.9 MB of source tarballs). Heaviest: vctrs 1.0 MB, rlang 766 KB, cli 629 KB. 2 more not on CRAN are not measured.

Depends (5)

genefilter Biobase progressstatsmethods

Imports (0)

none

LinkingTo (0)

none

Suggests (2)

devtools roxygen2

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (4)

Zhi Huang

Author, Maintainer since 0.1.0 (2018)

Zhi Han

Author, Contributor

Kun Huang

Author, Contributor

Jie Zhang

Author, Contributor

Releases (8)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.2.4Latest
record
2022-10-10 · current release · diff ↗
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
0.2.3
record
2021-03-03 · diff ↗
unarchivedReturned to CRAN
2021-01-14
0.2.2
record
2021-01-14 · diff ↗
archivedRemoved from CRAN
2020-08-12
check problems were not corrected in time
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
0.2.1
record
2019-03-12 · diff ↗
0.2.0
record
2019-02-20 · diff ↗ ·
added 1 export
fastFilter
0.1.2
record
2018-09-12 · diff ↗ ·
removed 1 export
pattern:^[[:alpha:]]+

added 3 exports
lmQCM, localMaximumQCM, merging_lmQCM

Show 4 earlier eventsHide 4 earlier events

0.1.1
record
2018-06-28 · diff ↗
R
R 3.5.0 released · 2018-04-23
0.1.0
record
2018-03-19
R
R 3.4.0 released · 2017-04-21

Package metadata

First published: 2018-03-19
Total releases: 8 / 8 yrs
License: MIT + file LICENSE OSI
Download size: 6.3 KB

Appears in task views

Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("lmQCM")

Format

Huang, Z., Han, Z., Huang, K., & Zhang, J. (2022). lmQCM: An Algorithm for Gene Co-Expression Analysis (Version 0.2.4) [Computer software]. https://doi.org/10.32614/CRAN.package.lmQCM

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for lmQCM version 0.2.4 [Data set]. HJJB, LLC. Data release v2026-10-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →