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compas

0.1.1Package record

Conformational Manipulations of Protein Atomic Structures

0packages depend
2.9Kdownloads / year
–test coverage
0/13flavors OK

Overview

About

Manipulate and analyze 3-D structural geometry of Protein Data Bank (PDB) files.

Install

Health

CRAN checks
13NOTE
Check messages
NOTERd filesr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
checkRd: (-1) atomdeps.Rd:9: Lost braces
     9 |  \item{"tangle"}: {Dihedral angle defined by atoms A-B-C-D as described below. \code{NA}'s represent the free side chain dihedral angles \emph{chi} for that amino acid.}
       |                   ^
checkRd: (-1) atomdeps.Rd:10: Lost braces; missing escapes or markup?
    10 |  \item{"names"}: {The component atoms of the amino acid side chain.  Represents atom D in the dihedral.}
       |                  ^
checkRd: (-1) atomdeps.Rd:11: Lost braces; missing escapes or markup?
    11 |  \item{"matx"}: {The names of atoms A,B,C in the dihedral, with rows corresponding to the atoms in "names".}
       |                 ^
checkRd: (-1) atomdeps.Rd:12: Lost braces; missing escapes or markup?
    12 |  \item{"bangle"}: {Planar bond angle formed between B-C-D}
       |                   ^
checkRd: (-1) atomdeps.Rd:13: Lost braces; missing escapes or markup?
    13 |  \item{"blength"}: {Bond length between C-D}
       |                    ^
NOTECRAN incoming feasibilityr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Maintainer: ‘Samuel W.K. Wong <samuel.wong@uwaterloo.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Samuel", "W.K."),
                      family = "Wong",
                      role = c("aut", "cre"),
                      email = "samuel.wong@uwaterloo.ca"),
               person(given = "Dylan",
                      family = "Shi",
                      role = "aut"),
               person(given = "Megan",
                      family = "Hazlett",
                      role = "aut"),
               person(given = "Jasmine",
                      family = "Cheng",
                      role = "aut"))
as necessary.

CRAN check page ↗

Slowest check: 3.6 min · r-devel-windows-x86_64
Status changes
  • NOTE13 NOTENow
  • NOTE14 NOTE2026-04-22
  • ERROR13 NOTE, 1 ERROR2026-04-18
  • NOTE14 NOTE2026-03-10
Advisories

none known

Documentation

In release 0.1.1
READMEYes · 65 wordsVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION
Help pages
9
Examples that run
100%5 run in a plain check
Exported functions with examples
100%
Documented parameters
100%
Return-value docs
100%
Help pages citing references
22%

Downloads

2.9K
CRAN downloads in the past year
Rank #14,061 · ~8/day · ~244/mo
Daily download trend is not available in this view yet.
29130 days
82390 days
2.9K1 year
Compare downloads with other packages →
Also on404 r2u73 c2d4u

Dependencies

Declared dependencies
4 external dependencies (excludes base and recommended)

Installing compas adds 3 packages (3 with compiled code, 5.0 MB of source tarballs). Heaviest: Rcpp 1.8 MB, RcppEigen 1.7 MB, bio3d 1.5 MB.

Depends (1)
R >= 3.2.0
Imports (2)
LinkingTo (2)
Suggests (0)
none
Enhances (0)
none
Reverse dependencies
0direct
0indirect

Nothing depends on this yet.

Datasets

People & History

People (from the free-text Author field) (4)

Maintainer since 0.1 (2018)

Releases (2)

Pick two releases to compare their code metrics.

  • R
    R 4.6.0 released · 2026-04-24
  • R
    R 4.5.0 released · 2025-04-11
  • R
    R 4.4.0 released · 2024-04-24
  • R
    R 4.3.0 released · 2023-04-21
  • R
    R 4.2.0 released · 2022-04-22
  • 0.1.1Latest
    record
    2022-01-09 · current release · diff ↗
  • R
    R 4.1.0 released · 2021-05-18
  • R
    R 4.0.0 released · 2020-04-24
  • R
    R 3.6.0 released · 2019-04-26
  • 0.1
    record
    2018-12-02
  • R
    R 3.5.0 released · 2018-04-23

Package metadata

First published
2018-12-02
Total releases
2 / 8 yrs
License
GPL-3 OSI
Minimum R
≥ 3.2.0
Bundled data
11 KB / 4 files
Download size
1.5 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("compas")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

APA

Balamuta, J. J. (2026). R Observatory: Metrics for compas version 0.1.1 [Data set]. HJJB, LLC. Data release v2026-10-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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