R Observatory: Metrics for packMBPLSDA version 0.9.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

packMBPLSDA

0.9.0Package record

Multi-Block Partial Least Squares Discriminant Analysis

0packages depend

2.5Kdownloads / year

–test coverage

11/13flavors OK

Overview

About

Maintained by Marion Brandolini-BunlonCRAN page ↗

Several functions are provided to implement a MBPLSDA : components search, optimal model components number search, optimal model validity test by permutation tests, observed values evaluation of optimal model parameters and predicted categories, bootstrap values evaluation of optimal model parameters and predicted cross-validated categories. The use of this package is described in Brandolini-Bunlon et al (2019. Multi-block PLS discriminant analysis for the joint analysis of metabolomic and epidemiological data. Metabolomics, 15(10):134).

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("packMBPLSDA", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-packmbplsda

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-packMBPLSDA

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-packMBPLSDA

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

2NOTE11OK

Check messages

NOTECRAN incoming feasibilityr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Maintainer: ‘Marion Brandolini-Bunlon <marion.brandolini-bunlon@inra.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marion",
                      family = "Brandolini-Bunlon",
                      role = c("aut", "cre"),
                      email = "marion.brandolini-bunlon@inra.fr"),
               person(given = "Stephanie",
                      family = "Bougeard",
                      role = "aut"),
               person(given = "Melanie",
                      family = "Petera",
                      role = "aut"),
               person(given = "Estelle",
                      family = "Pujos-Guillot",
                      role = "aut"))
as necessary.

CRAN check page ↗

Slowest check: 3.7 min · r-oldrel-windows-x86_64

Status changes

NOTE11 OK, 2 NOTE2026-06-09
ERROR11 OK, 1 NOTE, 1 ERROR2026-06-08
NOTE12 OK, 2 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.9.0

READMENoVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 19includes a package overview page
Examples that run: 65%11 run in a plain check · 6 only when donttest examples are enabled (R CMD check --as-cran)
Exported functions with examples: 100%
Documented parameters: 98%
Return-value docs: 100%
Help pages citing references: 68%

How these are measured

Downloads

2.5K

CRAN downloads in the past year

Rank #18,392 · ~7/day · ~209/mo

Releases R versions

Daily download trend is not available in this view yet.

27930 days

70390 days

2.5K1 year

Compare downloads with other packages →

Also on84 r2u5 autocran31 c2d4u

How downloads are counted

Dependencies

Declared dependencies

5 external dependencies (excludes base and recommended)

Installing packMBPLSDA adds 109 packages (57 with compiled code, 96 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, bslib 5.6 MB.

Depends (2)

ade4 pROC

Imports (5)

MASSparalleldoParallel foreach FactoMineR

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (from the free-text Author field) (4)

Marion Brandolini-Bunlon

Stephanie Bougeard

Melanie Petera

Estelle Pujos-Guillot

Maintainer since 0.6 (2019)

Releases (3)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.9.0Latest
record
2022-06-20 · current release · diff ↗
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
0.8.0
record
2020-03-15 · diff ↗
0.6
record
2019-05-16
R
R 3.6.0 released · 2019-04-26

Package metadata

First published: 2019-05-16
Total releases: 3 / 7 yrs
License: GPL (>= 2.0)
Bundled data: 48 KB / 8 files
Download size: 85 KB

Appears in task views

Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("packMBPLSDA")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for packMBPLSDA version 0.9.0 [Data set]. HJJB, LLC. Data release v2026-10-21. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →