R Observatory: Metrics for BASiNET version 0.0.5

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

BASiNET

0.0.5Package record

Classification of RNA Sequences using Complex Network Theory

0packages depend

3.5Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Fabricio Martins LopesCRAN page ↗

It makes the creation of networks from sequences of RNA, with this is done the abstraction of characteristics of these networks with a methodology of threshold for the purpose of making a classification between the classes of the sequences. There are four data present in the 'BASiNET' package, "sequences", "sequences2", "sequences-predict" and "sequences2-predict" with 11, 10, 11 and 11 sequences respectively. These sequences were taken from the data set used in the article (LI, Aimin; ZHANG, Junying; ZHOU, Zhongyin, 2014) doi:10.1186/1471-2105-15-311, these sequences are used to run examples. The BASiNET was published on Nucleic Acids Research, (ITO, Eric; KATAHIRA, Isaque; VICENTE, Fábio; PEREIRA, Felipe; LOPES, Fabrício, 2018) doi:10.1093/nar/gky462.

Install

R (CRAN)Ubuntu (r2u)

install.packages("BASiNET", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-basinet

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 5.9 min · r-release-macos-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK14 OK2026-04-06

Show 2 earlier changesHide 2 earlier changes

ERROR13 OK, 1 ERROR2026-04-04
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.0.5

READMENoVignettesYes · 1 · dynamicNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 7
Examples that run: 0%1 only when donttest examples are enabled (R CMD check --as-cran)
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (1)

Classification of mRNA and lncRNA sequences HTML

How these are measured

Downloads

3.5K

CRAN downloads in the past year

Rank #9,302 · ~10/day · ~290/mo

Releases R versions

Daily download trend is not available in this view yet.

36730 days

1K90 days

3.5K1 year

Compare downloads with other packages →

Also on110 r2u32 c2d4u

How downloads are counted

Dependencies

Declared dependencies

8 external dependencies (excludes base and recommended)

Installing BASiNET adds 39 packages (21 with compiled code, 56 MB of source tarballs). Heaviest: stringi 11 MB, RWekajars 9.6 MB, ggplot2 6.0 MB. 1 more not on CRAN is not measured.

Depends (1)

R >= 3.4.0

Imports (9)

igraph Biostrings RWeka randomForest rmcfsgrDevicesgraphicsstatsrJava

LinkingTo (0)

none

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (2)

Fabricio Martins Lopes

Author, Maintainer since 0.0.5 (2022) · added in 0.0.5

Eric Augusto Ito

Author

Previously maintained by Eric Augusto Ito (0.0.2 to 0.0.4).

Releases (4)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.0.5Latest
record
2022-08-19 · current release · diff ↗
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
0.0.4
record
2018-10-02 · diff ↗
R
R 3.5.0 released · 2018-04-23
0.0.3
record
2018-04-19 · diff ↗
0.0.2
record
2017-12-18
R
R 3.4.0 released · 2017-04-21

Package metadata

First published: 2017-12-18
Total releases: 4 / 9 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.4.0
Download size: 340 KB

Appears in task views

Network Analysis Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("BASiNET")

Format

Lopes, F. M., & Ito, E. A. (2022). BASiNET: Classification of RNA Sequences using Complex Network Theory (Version 0.0.5) [Computer software]. https://doi.org/10.32614/CRAN.package.BASiNET

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for BASiNET version 0.0.5 [Data set]. HJJB, LLC. Data release v2026-10-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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