sccore

Description

Core utilities for single-cell RNA-seq data analysis. Contained within are utility functions for working with differential expression (DE) matrices and count matrices, a collection of functions for manipulating and plotting data via 'ggplot2', and functions to work with cell graphs and cell embeddings. Graph-based methods include embedding kNN cell graphs into a UMAP <doi:10.21105/joss.00861>, collapsing vertices of each cluster in the graph, and propagating graph labels.

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CRAN Check Status

Namespaces in Imports field not imported from:
  ‘Seurat’ ‘tibble’ ‘utils’
  All declared Imports should be used.

Namespaces in Imports field not imported from:
  ‘Seurat’ ‘tibble’ ‘utils’
  All declared Imports should be used.

installed size is  5.7Mb
  sub-directories of 1Mb or more:
    libs   4.9Mb

installed size is  5.8Mb
  sub-directories of 1Mb or more:
    libs   4.9Mb

Check History

Namespaces in Imports field not imported from:
  ‘Seurat’ ‘tibble’ ‘utils’
  All declared Imports should be used.

Namespaces in Imports field not imported from:
  ‘Seurat’ ‘tibble’ ‘utils’
  All declared Imports should be used.

installed size is  5.7Mb
  sub-directories of 1Mb or more:
    libs   4.9Mb

installed size is  5.8Mb
  sub-directories of 1Mb or more:
    libs   4.9Mb

Reverse Dependencies (5)

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Version History