Description
Core utilities for single-cell RNA-seq data analysis. Contained within are utility functions for working with differential expression (DE) matrices and count matrices, a collection of functions for manipulating and plotting data via 'ggplot2', and functions to work with cell graphs and cell embeddings. Graph-based methods include embedding kNN cell graphs into a UMAP <doi:10.21105/joss.00861>, collapsing vertices of each cluster in the graph, and propagating graph labels.
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CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | NOTE |
| r-devel-linux-x86_64-fedora-gcc | NOTE |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
dependencies in R code
Namespaces in Imports field not imported from: ‘tibble’ ‘utils’ All declared Imports should be used.
dependencies in R code
Namespaces in Imports field not imported from: ‘tibble’ ‘utils’ All declared Imports should be used.
Check History
NOTE 10 OK · 4 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 22, 2026
dependencies in R code
Namespaces in Imports field not imported from: ‘tibble’ ‘utils’ All declared Imports should be used.
dependencies in R code
Namespaces in Imports field not imported from: ‘tibble’ ‘utils’ All declared Imports should be used.
installed package size
installed size is 5.7Mb
sub-directories of 1Mb or more:
libs 4.9Mb
installed package size
installed size is 5.8Mb
sub-directories of 1Mb or more:
libs 4.9Mb
ERROR 9 OK · 4 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 18, 2026
dependencies in R code
Namespaces in Imports field not imported from: ‘tibble’ ‘utils’ All declared Imports should be used.
dependencies in R code
Namespaces in Imports field not imported from: ‘tibble’ ‘utils’ All declared Imports should be used.
whether package can be installed
Installation failed. See 'd:/Rcompile/CRANpkg/local/4.6/sccore.Rcheck/00install.out' for details.
installed package size
installed size is 5.7Mb
sub-directories of 1Mb or more:
libs 4.9Mb
installed package size
installed size is 5.8Mb
sub-directories of 1Mb or more:
libs 4.9Mb
NOTE 10 OK · 4 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 10, 2026
dependencies in R code
Namespaces in Imports field not imported from: ‘tibble’ ‘utils’ All declared Imports should be used.
dependencies in R code
Namespaces in Imports field not imported from: ‘tibble’ ‘utils’ All declared Imports should be used.
installed package size
installed size is 5.7Mb
sub-directories of 1Mb or more:
libs 4.9Mb
installed package size
installed size is 5.8Mb
sub-directories of 1Mb or more:
libs 4.9Mb
ERROR 9 OK · 4 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 9, 2026
package dependencies
Package required but not available: ‘uwot’ Package suggested but not available for checking: ‘Seurat’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
dependencies in R code
Namespaces in Imports field not imported from: ‘tibble’ ‘utils’ All declared Imports should be used.
dependencies in R code
Namespaces in Imports field not imported from: ‘tibble’ ‘utils’ All declared Imports should be used.
installed package size
installed size is 5.7Mb
sub-directories of 1Mb or more:
libs 4.9Mb
installed package size
installed size is 5.8Mb
sub-directories of 1Mb or more:
libs 4.9Mb
NOTE 10 OK · 4 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
dependencies in R code
Namespaces in Imports field not imported from: ‘Seurat’ ‘tibble’ ‘utils’ All declared Imports should be used.
dependencies in R code
Namespaces in Imports field not imported from: ‘Seurat’ ‘tibble’ ‘utils’ All declared Imports should be used.
installed package size
installed size is 5.7Mb
sub-directories of 1Mb or more:
libs 4.9Mb
installed package size
installed size is 5.8Mb
sub-directories of 1Mb or more:
libs 4.9Mb