R Observatory: Metrics for BioInsight version 0.3.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

BioInsight

0.3.1Package record

Filter and Plot RNA Biotypes

0packages depend

3.8Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Luiz Antonio de Jesus RochaCRAN page ↗

Analyze and plot the abundance of different RNA biotypes present in a count matrix, this evaluation can be useful if you want to test different strategies of normalization or analyze a particular biotype in a differential gene expression analysis.

Install

R (CRAN)Ubuntu (r2u)

install.packages("BioInsight", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-bioinsight

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 1.3 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.3.1

READMENoVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 1
Examples that run: 100%1 run in a plain check
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 0%
Help pages citing references: 100%

How these are measured

Downloads

3.8K

CRAN downloads in the past year

Rank #8,058 · ~10/day · ~314/mo

Releases R versions

Daily download trend is not available in this view yet.

40330 days

1.1K90 days

3.8K1 year

Compare downloads with other packages →

Also on380 r2u38 c2d4u

How downloads are counted

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Installing BioInsight adds 8 packages (4 with compiled code, 2.7 MB of source tarballs). Heaviest: Rcpp 1.8 MB, knitr 479 KB, xfun 224 KB. 2 more not on CRAN are not measured.

Depends (3)

R >= 2.10edgeR limma

Imports (3)

knitr wordcloud RColorBrewer

LinkingTo (0)

none

Suggests (2)

testthat biomaRt

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (1)

Luiz Antonio de Jesus Rocha

Releases (3)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
0.3.1Latest
record
2021-06-20 · current release · diff ↗ ·
removed 1 export
revealRNA
R
R 4.1.0 released · 2021-05-18
0.2.0
record
2021-01-07 · diff ↗
0.1.0
record
2020-08-17
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2020-08-17
Total releases: 3 / 6 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 2.10
Download size: 1.0 MB

Appears in task views

Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("BioInsight")

Format

Antonio de Jesus Rocha, L. (2021). BioInsight: Filter and Plot RNA Biotypes (Version 0.3.1) [Computer software]. https://doi.org/10.32614/CRAN.package.BioInsight

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for BioInsight version 0.3.1 [Data set]. HJJB, LLC. Data release v2026-10-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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