Bioconductor topics

Browse 499 topics across software, annotation, experiment, and workflow packages.

Release: Showing tree for 3.23

AnnotationData(938)

ChipManufacturer(404)

AffymetrixChip(342)

AgilentChip(17)

ClonetechChip(0)

CodelinkChip(12)

IlluminaChip(29)

UniversityHealthNetwork(0)

JazaerimetaData(0)

OperonHumanV3(1)

PartheenMetaData(1)

Roberts2005Annotation(1)

ag(3)

hs25kresogen(1)

illuminaHumanv1(1)

illuminaHumanv2(1)

illuminaMousev1(1)

illuminaMousev1p1(1)

illuminaRatv1(1)

mm24kresogen(1)

pedbarrayv10(1)

xenopuslaevis(2)

MBNICustomCDF(0)

CustomDBSchema(10)

GeneCardsCustomSchema(0)

FunctionalAnnotation(30)

Anopheles_gambiae(4)

Apis_mellifera(4)

Arabidopsis_lyrata(0)

Arabidopsis_thaliana(15)

Asparagus_officinalis(1)

Bacillus_subtilis(2)

Caenorhabditis_elegans(12)

Callithrix_jacchus(2)

Canis_familiaris(16)

Chlamydomonas_reinhardtii(1)

Cicer_arietinum(1)

Ciona_intestinalis(0)

Danio_rerio(15)

Drosophila_melanogaster(17)

Drosophila_virilis(1)

Eremothecium_gossypii(0)

Escherichia_coli(12)

Gallus_gallus(14)

Gasterosteus_aculeatus(2)

Homo_sapiens(259)

Hordeum_vulgare(2)

Kluyveromyces_lactis(0)

Macaca_fascicularis(2)

Macaca_mulatta(12)

Magnaporthe_grisea(0)

Medicago_truncatula(0)

Monodelphis_domestica(1)

Mus_musculus(117)

Neurospora_crassa(0)

Oncorhynchus_mykiss(0)

Oryza_sativa(1)

Pan_paniscus(2)

Pan_troglodytes(11)

Plasmodium_falciparum(4)

Pseudomonas_aeruginosa(2)

Rattus_norvegicus(78)

Saccharomyces_cerevisiae(18)

Saccharum_officinarum(2)

Schizosaccharomyces_pombe(0)

Staphylococcus_aureus(2)

Taeniopygia_guttata(3)

Toxoplasma_gondii(1)

Triticum_aestivum(0)

Vitis_vinifera(5)

Xenopus_laevis(3)

Xenopus_tropicalis(1)

PackageType(655)

AnnotationHub(43)

FRMA(12)

InparanoidDb(0)

TxDb(50)

cdf(118)

db0(19)

SequenceAnnotation(5)

GenomicSequence(5)

ExperimentData(430)

AssayDomainData(107)

CopyNumberVariationData(4)

CpGIslandData(2)

ExpressionData(89)

DiseaseModel(97)

BreastCancerData(18)

ColonCancerData(8)

KidneyCancerData(3)

LeukemiaCancerData(8)

LungCancerData(8)

OvarianCancerData(3)

ProstateCancerData(7)

OrganismData(165)

Anopheles_gambiae_Data(0)

Apis_mellifera_Data(0)

Arabidopsis_lyrata_Data(0)

Arabidopsis_thaliana_Data(6)

Bacillus_subtilis_Data(2)

Bos_taurus_Data(0)

Caenorhabditis_elegans_Data(2)

Callithrix_jacchus_Data(0)

Canis_familiaris_Data(0)

Ciona_intestinalis_Data(0)

Danio_rerio_Data(4)

Drosophila_melanogaster_Data(8)

Drosophila_virilis_Data(0)

Eremothecium_gossypii_Data(0)

Escherichia_coli_Data(4)

Gallus_gallus_Data(0)

Gasterosteus_aculeatus_Data(0)

Glycine_max_Data(0)

Homo_sapiens_Data(123)

Hordeum_vulgare_Data(0)

Kluyveromyces_lactis_Data(0)

Macaca_mulatta_Data(0)

Magnaporthe_grisea_Data(0)

Medicago_truncatul_Data(0)

Monodelphis_domestica_Data(0)

Mus_musculus_Data(31)

Neurospora_crassa_Data(0)

Oncorhynchus_mykiss_Data(0)

Oryza_sativa_Data(0)

Pan_paniscus_Data(0)

Pan_troglodytes_Data(2)

Plasmodium_falciparum_Data(0)

Pseudomonas_aeruginosa_Data(2)

Rattus_norvegicus_Data(6)

Saccharomyces_cerevisiae_Data(12)

Saccharum_officinarum_Data(0)

Schizosaccharomyces_pombe_Data(0)

Staphylococcus_aureus_Data(2)

Sus_scrofa_Data(0)

Taeniopygia_guttata_Data(0)

Triticum_aestivum_Data(0)

Vitis_vinifera_Data(0)

Xenopus_laevis_Data(0)

Xenopus_tropicalis_Data(0)

Zea_mays_Data(0)

PackageTypeData(120)

ExperimentHub(115)

ImmunoOncologyData(5)

RepositoryData(98)

ArrayExpress(14)

GEO(65)

NCI(9)

PathwayInteractionDatabase(2)

Project1000genomes(3)

ReproducibleResearch(38)

SpecimenSource(126)

CellCulture(13)

TechnologyData(316)

FlowCytometryData(5)

HighThroughputImagingData(4)

MassSpectrometryData(26)

ImagingMassSpectrometryData(1)

MicroarrayData(132)

ChipOnChipData(11)

GenotypingArrayData(0)

MethylationArrayData(24)

MicroRNAArrayData(0)

MultiChannelData(1)

OneChannelData(3)

ProprietaryPlatformsData(0)

ReversePhaseProteinArrayData(0)

TissueMicroarrayData(17)

TwoChannelData(5)

mRNAArrayData(0)

MicrotitrePlateAssayData(1)

SequencingData(169)

ChIPSeqData(17)

ExomeSeqData(0)

MethylSeqData(2)

MicrobiomeData(12)

SangerSeqData(0)

SingleCellData(41)

SmallRNAData(1)

SpatialData(13)

Software(2,621)

AssayDomain(970)

CellBasedAssays(67)

CopyNumberVariation(66)

DNAMethylation(121)

GeneExpression(643)

GeneticVariability(41)

SNP(90)

Transcription(186)

BiologicalQuestion(1,034)

AlternativeSplicing(51)

DNA3DStructure(13)

DemethylateRegionDetection(0)

DenovoAssembler(0)

DifferentialDNA3DStructure(0)

DifferentialExpression(400)

DifferentialMethylation(63)

DifferentialPeakCalling(16)

DifferentialSplicing(38)

DriverMutation(2)

FunctionalPrediction(36)

GeneFusionDetection(2)

GenePrediction(28)

GeneRegulation(119)

GeneSetEnrichment(173)

GeneSignaling(13)

GenomeAnnotation(55)

GenomeAssembly(13)

GenomeWideAssociation(34)

GenomicVariation(42)

GermlineMutation(1)

HistoneModification(11)

IndelDetection(2)

LinkageDisequilibrium(5)

MetagenomeAssembly(0)

MicrosatelliteDetection(0)

MotifAnnotation(26)

MotifDiscovery(15)

NetworkEnrichment(52)

NetworkInference(62)

NucleosomePositioning(10)

PeakDetection(24)

QuantitativeTrailLocus(0)

SequenceMatching(55)

SomaticMutation(25)

SplicedAlignment(6)

StructuralVariation(3)

TranscriptomeVariant(6)

VariantAnnotation(35)

VariantDetection(13)

Infrastructure(615)

DataImport(349)

DataRepresentation(162)

GPU(1)

GUI(68)

ResearchField(1,390)

Agroinformatics(0)

BiomedicalInformatics(87)

CellBiology(69)

Cheminformatics(19)

ComparativeGenomics(13)

ComputationalChemistry(0)

Epigenetics(108)

Epitranscriptomics(4)

FunctionalGenomics(107)

Immunology(426)

ImmunoOncology(426)

ImmunoPrevention(0)

Immunogenetics(1)

MathematicalBiology(10)

Metabolomics(124)

Metagenomics(38)

Pharmacogenetics(16)

Pharmacogenomics(19)

Phylogenetics(16)

Proteomics(193)

StructuralGenomics(1)

StructuralPrediction(12)

SystemsBiology(100)

Transcriptomics(299)

StatisticalMethod(885)

Classification(189)

Clustering(296)

DecisionTree(8)

DimensionReduction(94)

FeatureExtraction(68)

GraphAndNetwork(131)

HiddenMarkovModel(16)

MultidimensionalScaling(5)

NeuralNetwork(5)

PatternLogic(3)

PrincipalComponent(59)

Regression(156)

StructuralEquationModels(1)

SupportVectorMachine(11)

Technology(1,613)

AnnotationHubSoftware(5)

ExperimentHubSoftware(11)

FlowCytometry(72)

MassSpectrometry(154)

ImagingMassSpectrometry(3)

Microarray(399)

GenotypingArray(2)

MethylationArray(46)

MicroRNAArray(5)

MultiChannel(7)

ProprietaryPlatforms(11)

ReversePhaseProteinArray(0)

TissueMicroarray(2)

mRNAMicroarray(24)

MicrotitrePlateAssay(14)

Sequencing(939)

DenovoGenome(0)

DenovoTranscriptome(0)

HiC(36)

MicrobialStrain(1)

PooledScreens(6)

TargetedResequencing(6)

WholeGenome(40)

SingleCell(348)

qPCR(13)

WorkflowManagement(1)

WorkflowStep(1,321)

MultipleSequenceAlignment(19)

Annotation(152)

BatchEffect(76)

ExperimentalDesign(34)

GenomeBrowsers(2)

MultipleComparison(184)

Normalization(188)

GO(76)

KEGG(55)

NCINatureCurated(0)

Preprocessing(276)

QualityControl(245)

ReportWriting(39)

Visualization(614)

AnnotationWorkflow(4)

BasicWorkflow(5)

DifferentialSplicingWorkflow(0)

EpigeneticsWorkflow(7)

GeneExpressionWorkflow(13)

GenomicVariantsWorkflow(0)

ImmunoOncologyWorkflow(20)

ProteomicsWorkflow(1)

ResourceQueryingWorkflow(2)

SingleCellWorkflow(10)

SpatialWorkflow(1)

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