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Cascade

Selection, Reverse-Engineering and Prediction in Cascade Networks

v2.3 · Sep 19, 2025 · GPL (>= 2)

Description

A modeling tool allowing gene selection, reverse engineering, and prediction in cascade networks. Jung, N., Bertrand, F., Bahram, S., Vallat, L., and Maumy-Bertrand, M. (2014) <doi:10.1093/bioinformatics/btt705>.

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CRAN Check Status

4 WARNING
10 OK
Show all 14 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang WARNING
r-devel-linux-x86_64-debian-gcc WARNING
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 WARNING
r-release-linux-x86_64 WARNING
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (4 non-OK)
WARNING r-devel-linux-x86_64-debian-clang

sizes of PDF files under ‘inst/doc’

‘gs+qpdf’ made some significant size reductions:
     compacted ‘E-MTAB-1475_re-analysis.pdf’ from 550Kb to 174Kb
  consider running tools::compactPDF(gs_quality = "ebook") on these files,
  or build the source package with --compact-vignettes=both
WARNING r-devel-linux-x86_64-debian-gcc

sizes of PDF files under ‘inst/doc’

‘gs+qpdf’ made some significant size reductions:
     compacted ‘E-MTAB-1475_re-analysis.pdf’ from 550Kb to 174Kb
  consider running tools::compactPDF(gs_quality = "ebook") on these files,
  or build the source package with --compact-vignettes=both
WARNING r-patched-linux-x86_64

sizes of PDF files under ‘inst/doc’

‘gs+qpdf’ made some significant size reductions:
     compacted ‘E-MTAB-1475_re-analysis.pdf’ from 550Kb to 174Kb
  consider running tools::compactPDF(gs_quality = "ebook") on these files,
  or build the source package with --compact-vignettes=both
WARNING r-release-linux-x86_64

sizes of PDF files under ‘inst/doc’

‘gs+qpdf’ made some significant size reductions:
     compacted ‘E-MTAB-1475_re-analysis.pdf’ from 550Kb to 174Kb
  consider running tools::compactPDF(gs_quality = "ebook") on these files,
  or build the source package with --compact-vignettes=both

Check History

WARNING 13 OK · 0 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE Mar 28, 2026
WARNING r-devel-linux-x86_64-debian-gcc

sizes of PDF files under ‘inst/doc’

‘gs+qpdf’ made some significant size reductions:
     compacted ‘E-MTAB-1475_re-analysis.pdf’ from 550Kb to 174Kb
  consider running tools::compactPDF(gs_quality = "ebook") on these files,
  or build the source package with --compact-vignettes=both
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Reverse Dependencies (1)

imports

Dependency Network

Dependencies Reverse dependencies abind animation cluster igraph lars lattice limma magic nnls stats4 survival tnet VGAM SelectBoost Cascade

Version History

new 2.3 Mar 10, 2026
updated 2.3 ← 2.2 diff Sep 18, 2025
updated 2.2 ← 2.1 diff Aug 20, 2025
updated 2.1 ← 2.0 diff Nov 27, 2022
updated 2.0 ← 1.8 diff Mar 18, 2021
updated 1.8 ← 1.7 diff Aug 23, 2019
new 1.7 Feb 17, 2019