omicwas
Cell-Type-Specific Association Testing in Bulk Omics Experiments
Description
In bulk epigenome/transcriptome experiments, molecular expression is measured in a tissue, which is a mixture of multiple types of cells. This package tests association of a disease/phenotype with a molecular marker for each cell type. The proportion of cell types in each sample needs to be given as input. The package is applicable to epigenome-wide association study (EWAS) and differential gene expression analysis. Takeuchi and Kato (submitted) "omicwas: cell-type-specific epigenome-wide and transcriptome association study".
Downloads
271
Last 30 days
15686th
835
Last 90 days
3.1K
Last year
Trend: -10.6% (30d vs prior 30d)
CRAN Check Status
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
CRAN incoming feasibility
Maintainer: ‘Fumihiko Takeuchi <fumihiko@takeuchi.name>’
Found the following URLs which should use \doi (with the DOI name only):
File ‘ctassoc.Rd’:
https://doi.org/10.1080/03610927608827353
CRAN incoming feasibility
Maintainer: ‘Fumihiko Takeuchi <fumihiko@takeuchi.name>’
Found the following URLs which should use \doi (with the DOI name only):
File ‘ctassoc.Rd’:
https://doi.org/10.1080/03610927608827353
Check History
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
CRAN incoming feasibility
Maintainer: ‘Fumihiko Takeuchi <fumihiko@takeuchi.name>’
Found the following URLs which should use \doi (with the DOI name only):
File ‘ctassoc.Rd’:
https://doi.org/10.1080/03610927608827353
CRAN incoming feasibility
Maintainer: ‘Fumihiko Takeuchi <fumihiko@takeuchi.name>’
Found the following URLs which should use \doi (with the DOI name only):
File ‘ctassoc.Rd’:
https://doi.org/10.1080/03610927608827353