Signac
Analysis of Single-Cell Chromatin Data
Description
A framework for the analysis and exploration of single-cell chromatin data. The 'Signac' package contains functions for quantifying single-cell chromatin data, computing per-cell quality control metrics, dimension reduction and normalization, visualization, and DNA sequence motif analysis. Reference: Stuart et al. (2021) <doi:10.1038/s41592-021-01282-5>.
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CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 25, 2026
NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 22, 2026
installed package size
installed size is 14.8Mb
sub-directories of 1Mb or more:
R 2.0Mb
extdata 9.8Mb
libs 1.9Mb
installed package size
installed size is 14.9Mb
sub-directories of 1Mb or more:
R 2.1Mb
extdata 9.8Mb
libs 1.9Mb
installed package size
installed size is 13.3Mb
sub-directories of 1Mb or more:
R 1.2Mb
extdata 9.8Mb
libs 1.1Mb
ERROR 10 OK · 3 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 18, 2026
whether package can be installed
Installation failed. See 'd:/Rcompile/CRANpkg/local/4.6/Signac.Rcheck/00install.out' for details.
installed package size
installed size is 14.8Mb
sub-directories of 1Mb or more:
R 2.0Mb
extdata 9.8Mb
libs 1.9Mb
installed package size
installed size is 14.9Mb
sub-directories of 1Mb or more:
R 2.1Mb
extdata 9.8Mb
libs 1.9Mb
installed package size
installed size is 13.3Mb
sub-directories of 1Mb or more:
R 1.2Mb
extdata 9.8Mb
libs 1.1Mb
NOTE 10 OK · 4 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 8, 2026
Rd cross-references
Unknown package ‘chromVAR’ in Rd xrefs
installed package size
installed size is 14.8Mb
sub-directories of 1Mb or more:
R 2.0Mb
extdata 9.8Mb
libs 1.9Mb
installed package size
installed size is 14.9Mb
sub-directories of 1Mb or more:
R 2.1Mb
extdata 9.8Mb
libs 1.9Mb
installed package size
installed size is 13.2Mb
sub-directories of 1Mb or more:
R 1.1Mb
extdata 9.8Mb
libs 1.1Mb
ERROR 7 OK · 5 NOTE · 0 WARNING · 2 ERROR · 0 FAILURE Apr 2, 2026
Rd cross-references
Unknown package ‘chromVAR’ in Rd xrefs
Rd cross-references
Unknown package ‘chromVAR’ in Rd xrefs
Rd cross-references
Unknown package ‘chromVAR’ in Rd xrefs
package dependencies
Package required but not available: ‘Seqinfo’ Packages suggested but not available for checking: 'TFBSTools', 'motifmatchr' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
installed package size
installed size is 14.8Mb
sub-directories of 1Mb or more:
R 2.0Mb
extdata 9.8Mb
libs 1.9Mb
package dependencies
Package required but not available: ‘Seqinfo’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
installed package size
installed size is 13.2Mb
sub-directories of 1Mb or more:
R 1.1Mb
extdata 9.8Mb
libs 1.1Mb
NOTE 8 OK · 6 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
Rd cross-references
Unknown package ‘chromVAR’ in Rd xrefs
Rd cross-references
Packages unavailable to check Rd xrefs: ‘motifmatchr’, ‘TFBSTools’ Unknown package ‘chromVAR’ in Rd xrefs
Rd cross-references
Packages unavailable to check Rd xrefs: ‘motifmatchr’, ‘TFBSTools’ Unknown package ‘chromVAR’ in Rd xrefs
installed package size
installed size is 14.8Mb
sub-directories of 1Mb or more:
R 2.0Mb
extdata 9.8Mb
libs 1.9Mb
installed package size
installed size is 14.9Mb
sub-directories of 1Mb or more:
R 2.1Mb
extdata 9.8Mb
libs 1.9Mb
installed package size
installed size is 13.2Mb
sub-directories of 1Mb or more:
R 1.1Mb
extdata 9.8Mb
libs 1.1Mb