R Observatory: Metrics for imputeLCMD version 2.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

imputeLCMD

2.1Package record

A Collection of Methods for Left-Censored Missing Data Imputation

0packages dependsuggested by 2

34.6Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Samuel WieczorekCRAN page ↗

A collection of functions for left-censored missing data imputation. Left-censoring is a special case of missing not at random (MNAR) mechanism that generates non-responses in proteomics experiments. The package also contains functions to artificially generate peptide/protein expression data (log-transformed) as random draws from a multivariate Gaussian distribution as well as a function to generate missing data (both randomly and non-randomly). For comparison reasons, the package also contains several wrapper functions for the imputation of non-responses that are missing at random. * New functionality has been added: a hybrid method that allows the imputation of missing values in a more complex scenario where the missing data are both MAR and MNAR.

Install

R (CRAN)Ubuntu (r2u)

install.packages("imputeLCMD", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-imputelcmd

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 1.9 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 2.1

READMENoVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 18
Examples that run: 100%2 run in a plain check
Exported functions with examples: 0%
Documented parameters: 96%
Return-value docs: 100%
Help pages citing references: 22%

How these are measured

Downloads

34.6K

CRAN downloads in the past year

Rank #2,240 · ~95/day · ~2.9K/mo

Releases R versions

Daily download trend is not available in this view yet.

2.9K30 days

7.6K90 days

34.6K1 year

Compare downloads with other packages →

Also on434 r2u1.8K bioconda45 c2d4u

How downloads are counted

Dependencies

Declared dependencies

4 external dependencies (excludes base and recommended)

Installing imputeLCMD adds 6 packages (5 with compiled code, 4.2 MB of source tarballs). Heaviest: sandwich 1.4 MB, mvtnorm 1.0 MB, gmm 919 KB. 2 more not on CRAN are not measured.

Depends (5)

R >= 2.10tmvtnorm norm pcaMethods impute

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Suggested by 2

Suggests, most downloaded first

readyomics R.ComDim

How these are counted

Code & Tests

Datasets

People & History

People (3)

Samuel Wieczorek

Maintainer since 2.1 (2022), Contributor · added in 2.1

Thomas Burger

Author · added in 2.1

Cosmin Lazar

Author

Previously maintained by Cosmin Lazar (1.0 to 2.0).

Releases (3)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
2.1Latest
record
2022-06-10 · current release · diff ↗ ·
removed 1 export
pattern:^[[:alpha:]]+

added 14 exports
generate.ExpressionData, generate.RollUpMap, impute.MAR, impute.MAR.MNAR, impute.MinDet, impute.MinProb, impute.QRILC, impute.ZERO, impute.wrapper.KNN, impute.wrapper.MLE, impute.wrapper.SVD, insertMVs, model.Selector, pep2prot
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
2.0
record
2015-01-19 · diff ↗
1.0
record
2014-07-13
R
R 3.1.0 released · 2014-04-10

Package metadata

First published: 2014-07-13
Total releases: 3 / 12 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 2.10
Bundled data: 561 KB / 5 files
Download size: 577 KB

Appears in task views

Missing Data Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("imputeLCMD")

Format

Wieczorek, S., Burger, T., & Lazar, C. (2022). imputeLCMD: A Collection of Methods for Left-Censored Missing Data Imputation (Version 2.1) [Computer software]. https://doi.org/10.32614/CRAN.package.imputeLCMD

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for imputeLCMD version 2.1 [Data set]. HJJB, LLC. Data release v2026-10-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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