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PINSPlus

Clustering Algorithm for Data Integration and Disease Subtyping

v2.0.9 · Jul 29, 2025 · LGPL

Description

Provides a robust approach for omics data integration and disease subtyping. PINSPlus is fast and supports the analysis of large datasets with hundreds of thousands of samples and features. The software automatically determines the optimal number of clusters and then partitions the samples in a way such that the results are robust against noise and data perturbation (Nguyen et al. (2019) <DOI: 10.1093/bioinformatics/bty1049>, Nguyen et al. (2017)<DOI: 10.1101/gr.215129.116>, Nguyen et al. (2021)<DOI: 10.3389/fonc.2021.725133>).

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CRAN Check Status

14 OK
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r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Reverse Dependencies (1)

imports

Dependency Network

Dependencies Reverse dependencies foreach entropy doParallel matrixStats Rcpp RcppParallel FNN cluster irlba mclust impute scISR PINSPlus

Version History

new 2.0.9 Mar 10, 2026
updated 2.0.9 ← 2.0.7 diff Jul 28, 2025
updated 2.0.7 ← 2.0.6 diff Apr 4, 2024
updated 2.0.6 ← 2.0.5 diff Dec 13, 2021
updated 2.0.5 ← 2.0.4 diff Aug 5, 2020
updated 2.0.4 ← 2.0.3 diff May 30, 2020
updated 2.0.3 ← 2.0.2 diff May 27, 2020
updated 2.0.2 ← 2.0.1 diff Apr 12, 2020
updated 2.0.1 ← 2.0.0 diff Apr 1, 2020
updated 2.0.0 ← 1.0.3 diff Jun 3, 2019
updated 1.0.3 ← 1.0.2 diff Jan 6, 2019
updated 1.0.2 ← 1.0.1 diff Jul 16, 2018
updated 1.0.1 ← 1.0.0 diff May 2, 2018
new 1.0.0 Mar 15, 2018