Description
SEA performs simultaneous feature-set testing for (gen)omics data. It tests the unified null hypothesis and controls the family-wise error rate for all possible pathways. The unified null hypothesis is defined as: "The proportion of true features in the set is less than or equal to a threshold." Family-wise error rate control is provided through use of closed testing with Simes test. There are some practical functions to play around with the pathways of interest.
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CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
CRAN incoming feasibility
Maintainer: ‘Mitra Ebrahimpoor<mitra.ebrahimpoor@gmail.com>’
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Authors@R: person(given = "Mitra",
family = "Ebrahimpoor",
role = c("aut", "cre"),
email = "mitra.ebrahimpoor@gmail.com")
as necessary.
CRAN incoming feasibility
Maintainer: ‘Mitra Ebrahimpoor<mitra.ebrahimpoor@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Mitra",
family = "Ebrahimpoor",
role = c("aut", "cre"),
email = "mitra.ebrahimpoor@gmail.com")
as necessary.
Check History
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
CRAN incoming feasibility
Maintainer: ‘Mitra Ebrahimpoor<mitra.ebrahimpoor@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Mitra",
family = "Ebrahimpoor",
role = c("aut", "cre"),
email = "mitra.ebrahimpoor@gmail.com")
as necessary.
CRAN incoming feasibility
Maintainer: ‘Mitra Ebrahimpoor<mitra.ebrahimpoor@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Mitra",
family = "Ebrahimpoor",
role = c("aut", "cre"),
email = "mitra.ebrahimpoor@gmail.com")
as necessary.
Code
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