adjclust
Adjacency-Constrained Clustering of a Block-Diagonal Similarity Matrix
Description
Implements a constrained version of hierarchical agglomerative clustering, in which each observation is associated to a position, and only adjacent clusters can be merged. Typical application fields in bioinformatics include Genome-Wide Association Studies or Hi-C data analysis, where the similarity between items is a decreasing function of their genomic distance. Taking advantage of this feature, the implemented algorithm is time and memory efficient. This algorithm is described in Ambroise et al (2019) <doi:10.1186/s13015-019-0157-4>.
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Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (4 non-OK)
Rd cross-references
Package unavailable to check Rd xrefs: ‘snpStats’
installed package size
installed size is 5.2Mb
sub-directories of 1Mb or more:
doc 2.6Mb
libs 2.2Mb
package dependencies
Packages suggested but not available for checking: 'HiTC', 'snpStats'
installed package size
installed size is 5.3Mb
sub-directories of 1Mb or more:
doc 2.6Mb
libs 2.2Mb
Check History
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
package dependencies
Packages suggested but not available for checking: 'HiTC', 'snpStats'
installed package size
installed size is 5.3Mb
sub-directories of 1Mb or more:
doc 2.6Mb
libs 2.2Mb