R Observatory: Metrics for supclust version 1.1-1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

supclust

1.1-1Package record

Supervised Clustering of Predictor Variables Such as Genes

0packages depend

3Kdownloads / year

84.7%test coverage

11/13flavors OK

Overview

About

Maintained by Martin MaechlerCRAN page ↗GitHub ↗

Methodology for supervised grouping aka "clustering" of potentially many predictor variables, such as genes etc, implementing algorithms 'PELORA' and 'WILMA'.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("supclust", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("mmaechler/supclust")

Development version from mmaechler/supclust. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-supclust

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-supclust

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-supclust

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

2NOTE11OK

Check messages

NOTECRAN incoming feasibilityr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Maintainer: ‘Martin Maechler <maechler@stat.math.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marcel",
                      family = "Dettling",
                      role = "aut",
                      email = "marcel.dettling@zhaw.ch"),
               person(given = "Martin",
                      family = "Maechler",
                      role = c("aut", "cre"),
                      email = "maechler@stat.math.ethz.ch"))
as necessary.

CRAN check page ↗

Slowest check: 2.6 min · r-devel-windows-x86_64

Status changes

NOTE11 OK, 2 NOTENow
NOTE12 OK, 2 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.1-1

READMEYes · 115 wordsVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 21
Examples that run: 100%19 run in a plain check
Exported functions with examples: 88%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 24%

How these are measured

Downloads

3K

CRAN downloads in the past year

Rank #14,088 · ~8/day · ~252/mo

Releases R versions

Daily download trend is not available in this view yet.

29730 days

84290 days

3K1 year

Compare downloads with other packages →

Also on364 r2u6 autocran53 c2d4u

How downloads are counted

Repository

mmaechler/supclust ↗Account: mmaechler

2Stars

0Forks

1Open issues

0Open PRs

0Releases

83Commits

1Commit identities

83 commits · Last activity 2024-08-14 · 0% stars, 30d · Default branch at 1.1-2, ahead of CRAN 1.1-1 (checked 2026-10-21)

Responsiveness

not measured

Stars over time

2024-09-04 · 22026-07-07 · 2

How these are measured

PracticesBeta

Checks run against github.com/mmaechler/supclust on 2026-10-21.

No development-tooling practices detected in the upstream repository.

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

0 external dependencies (excludes base and recommended)

Installing supclust adds no packages beyond those that come with R.

Depends (0)

none

Imports (4)

graphicsstatsrpartclass

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (from the free-text Author field) (2)

Marcel Dettling

Martin Maechler

Maintainer since 1.0-1 (2004)

Releases (10)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
1.1-1Latest
record
2021-09-27 · current release · diff ↗
R
R 4.1.0 released · 2021-05-18
1.1-0
record
2020-10-15 · diff ↗
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
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R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
R
R 3.1.0 released · 2014-04-10
R
R 3.0.0 released · 2013-04-03

Show 26 earlier eventsHide 26 earlier events

R
R 2.15.0 released · 2012-03-30
1.0-7
record
2011-12-02 · diff ↗ ·
added 11 exports
pelora, wilma, nnr, dlda, logreg, aggtrees, margin, score, sign.change, sign.flip, standardize.genes
R
R 2.14.0 released · 2011-10-31
R
R 2.13.0 released · 2011-04-13
R
R 2.12.0 released · 2010-10-15
1.0-6
record
2010-09-02 · diff ↗
R
R 2.11.0 released · 2010-04-22
R
R 2.10.0 released · 2009-10-26
1.0-5.1
record
2009-08-21 · diff ↗
R
R 2.9.0 released · 2009-04-17
R
R 2.8.0 released · 2008-10-20
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R 2.7.0 released · 2008-04-22
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R 2.6.0 released · 2007-10-03
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R 2.5.0 released · 2007-04-24
R
R 2.4.0 released · 2006-10-03
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R 2.3.0 released · 2006-04-24
R
R 2.2.0 released · 2005-10-06
1.0-5
record
2005-05-18 · diff ↗
1.0-4
record
2005-05-10 · diff ↗
R
R 2.1.0 released · 2005-04-18
1.0-3
record
2004-11-17 · diff ↗
R
R 2.0.0 released · 2004-10-04
1.0-2
record
2004-08-19 · diff ↗
R
R 1.9.0 released · 2004-04-12
1.0-1
record
2004-01-14
R
R 1.8.0 released · 2003-10-08

Package metadata

First published: 2004-01-14
Total releases: 10 / 22 yrs
License: GPL-3 OSI
Bundled data: 57 KB / 1 file
Download size: 126 KB

Appears in task views

Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("supclust")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for supclust version 1.1-1 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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