R Observatory: Metrics for prioritylasso version 0.4.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

prioritylasso

0.4.0Package record

Analyzing Multiple Omics Data with an Offset Approach

0packages depend

5.7Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Roman HornungCRAN page ↗

Fits successive Lasso models for several blocks of (omics) data with different priorities and takes the predicted values as an offset for the next block. Also offers options to deal with block-wise missingness in multi-omics data.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("prioritylasso", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-prioritylasso

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-prioritylasso

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-prioritylasso

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 3.4 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-20
NOTE12 OK, 2 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.4.0

READMEYes · 418 wordsVignettesYes · 2 · dynamicNEWSYes · 33% structuredCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 8
Examples that run: 100%3 run in a plain check
Exported functions with examples: 67%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 25%

Vignettes (2)

How these are measured

Downloads

5.7K

CRAN downloads in the past year

Rank #10,176 · ~16/day · ~474/mo

Releases R versions

Daily download trend is not available in this view yet.

37730 days

98690 days

5.7K1 year

Compare downloads with other packages →

Also on133 r2u5 autocran81 c2d4u

How downloads are counted

Dependencies

Declared dependencies

8 external dependencies (excludes base and recommended)

Installing prioritylasso adds 8 packages (5 with compiled code, 7.5 MB of source tarballs). Heaviest: glmnet 2.7 MB, Rcpp 1.8 MB, RcppEigen 1.7 MB.

Depends (1)

R >= 3.5.0

Imports (4)

survivalglmnetutilscheckmate

LinkingTo (0)

none

Suggests (6)

testthat knitr rmarkdown pROC bookdown ipflasso

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (4)

Roman Hornung

Author, Maintainer since 0.2.4 (2020) · added in 0.2.1

Alina Bauer

Author · added in 0.2.2

Jonas Hagenberg

Author · added in 0.3.0

Simon Klau

Author

Previously maintained by Simon Klau (0.1.0 to 0.2.3).

Listed in earlier versions (1)

Anne-Laure Boulesteix

no longer listed · 0.1.0 to 0.2.0

Releases (10)

Pick two releases to compare their code metrics.

0.4.0Latest
record
2026-06-16 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.3.1
record
2023-04-10 · diff ↗
0.3.0
record
2023-03-28 · diff ↗ ·
added 1 export
missing.control
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
unarchivedReturned to CRAN
2020-11-09
0.2.5
record
2020-11-09 · diff ↗
archivedRemoved from CRAN
2020-09-24
problems were not corrected in time
0.2.4
record
2020-09-07 · diff ↗
R
R 4.0.0 released · 2020-04-24
0.2.3
record
2019-12-17 · diff ↗
0.2.2
record
2019-06-05 · diff ↗

Show 7 earlier eventsHide 7 earlier events

R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
0.2.1
record
2017-09-25 · diff ↗
0.2.0
record
2017-07-17 · diff ↗
R
R 3.4.0 released · 2017-04-21
0.1.0
record
2017-03-16
R
R 3.3.0 released · 2016-05-03

Package metadata

First published: 2017-03-16
Total releases: 10 / 9 yrs
License: GPL-2 OSI
Minimum R: ≥ 3.5.0
Bundled data: 3.0 MB / 1 file
Download size: 3.4 MB

Appears in task views

Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("prioritylasso")

Format

Hornung, R., Bauer, A., Hagenberg, J., & Klau, S. (2026). prioritylasso: Analyzing Multiple Omics Data with an Offset Approach (Version 0.4.0) [Computer software]. https://doi.org/10.32614/CRAN.package.prioritylasso

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for prioritylasso version 0.4.0 [Data set]. HJJB, LLC. Data release v2026-10-20. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-20, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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