rPanglaoDB
Download and Merge Single-Cell RNA-Seq Data from the PanglaoDB Database
v0.2.1
·
May 12, 2021
·
GPL-3
Description
Download and merge labeled single-cell RNA-seq data from the PanglaoDB <https://panglaodb.se/> into a Seurat object.
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CRAN Check Status
1
ERROR
13
OK
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | ERROR |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (1 non-OK)
ERROR
r-release-macos-arm64
examples
Running examples in ‘rPanglaoDB-Ex.R’ failed The error most likely occurred in: > ### Name: getSampleComposition > ### Title: Get the cell-type content for each sample from the panglaoDB > ### database. > ### Aliases: getSampleComposition > > ### ** Examples > > # From PanglaoDB > # https://panglaodb.se/list_clusters_and_cell_types.html?sra=SRA689041&srs=SRS3166675 > > SRS3166675 <- getSampleComposition(srs = 'SRS3166675') Error in curl::curl_download(url, file, quiet = quiet, mode = mode, handle = handle) : Timeout was reached [panglaodb.se]: Resolving timed out after 10002 milliseconds Calls: getSampleComposition ... getSampleList -> <Anonymous> -> <Anonymous> -> raise_libcurl_error Execution halted
Check History
ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 10, 2026
ERROR
r-release-macos-arm64
examples
Running examples in ‘rPanglaoDB-Ex.R’ failed The error most likely occurred in: > ### Name: getSampleComposition > ### Title: Get the cell-type content for each sample from the panglaoDB > ### database. > ### Aliases: getSampleComposition > > ### ...[truncated]... le, quiet = quiet, mode = mode, handle = handle) : Timeout was reached [panglaodb.se]: Resolving timed out after 10002 milliseconds Calls: getSampleComposition ... getSampleList -> <Anonymous> -> <Anonymous> -> raise_libcurl_error Execution halted