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CB2

CRISPR Pooled Screen Analysis using Beta-Binomial Test

v1.3.8 · Jan 29, 2026 · MIT + file LICENSE
CRAN GitHub Mirror

Description

Provides functions for hit gene identification and quantification of sgRNA (single-guided RNA) abundances for CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) pooled screen data analysis. Details are in Jeong et al. (2019) <doi:10.1101/gr.245571.118> and Baggerly et al. (2003) <doi:10.1093/bioinformatics/btg173>.

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2 NOTE
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r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (2 non-OK)
NOTE r-oldrel-macos-arm64

installed package size

installed size is  6.4Mb
  sub-directories of 1Mb or more:
    data      1.5Mb
    extdata   1.1Mb
    libs      3.3Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is  7.5Mb
  sub-directories of 1Mb or more:
    data      2.5Mb
    extdata   1.1Mb
    libs      3.4Mb

Check History

NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE r-oldrel-macos-arm64

installed package size

installed size is  6.4Mb
  sub-directories of 1Mb or more:
    data      1.5Mb
    extdata   1.1Mb
    libs      3.3Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is  7.5Mb
  sub-directories of 1Mb or more:
    data      2.5Mb
    extdata   1.1Mb
    libs      3.4Mb

Dependency Network

Dependencies Reverse dependencies Rcpp metap magrittr dplyr tibble stringr ggplot2 tidyr glue pheatmap readr R.utils CB2

Version History

new 1.3.8 Mar 10, 2026
updated 1.3.8 ← 1.3.6 diff Jan 28, 2026
updated 1.3.6 ← 1.3.4 diff Sep 30, 2025
updated 1.3.4 ← 1.3.3 diff Jul 23, 2020
updated 1.3.3 ← 1.3.2 diff May 25, 2020
updated 1.3.2 ← 1.3.1 diff May 11, 2020
updated 1.3.1 ← 1.3.0 diff Apr 14, 2020
updated 1.3.0 ← 1.2.2 diff Dec 16, 2019
updated 1.2.2 ← 1.2.1 diff Dec 2, 2019
updated 1.2.1 ← 1.1 diff May 15, 2019
updated 1.1 ← 1.0 diff Feb 18, 2019
new 1.0 Feb 10, 2019