R Observatory: Metrics for metaMA version 3.1.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

metaMA

3.1.3

Meta-Analysis for MicroArrays

0packages depend

5Kdownloads / year

–test coverage

11/13checks pass

Overview

About

Maintained by Samuel BlanckFirst published 2009-02-266 releasesCRAN page ↗

Combination of either p-values or modified effect sizes from different studies to find differentially expressed genes.

Install

R (CRAN)Ubuntu (r2u)

install.packages("metaMA", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-metama

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 1.4 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

2

Dependencies · direct

Check history

NOTE2026-06-09
11 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
WARNING2026-06-08
11 OK · 1 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-03-10
11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 71%

Downloads

5K

CRAN downloads in the past year

Rank #9,182 · ~14/day · ~418/mo

Releases R versions

Daily download trend is not available in this view yet.

31530 days

1K90 days

5K1 year

Compare downloads with other packages →

Also on108 r2u720 bioconda85 c2d4u

Dependencies

Declared dependencies

9 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (2)

limma SMVar

LinkingTo (0)

none

Suggests (7)

GEOquery org.Hs.eg.db VennDiagram annaffy hgu133plus2.db hgu133a.db hgu95av2.db

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (0)

Author records are not tracked yet for this package.

Listed in earlier versions (1)

Guillemette Marot

no longer listed · 1.1 to 3.1.3

Package Timeline

6 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
3.1.3Latest
2022-04-12 · current release · diff ↗
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
3.1.2
2015-01-28 · diff ↗
3.1.1
2015-01-26 · diff ↗
R
R 3.1.0 released · 2014-04-10

Show 12 earlier events

R
R 3.0.0 released · 2013-04-03
2.1
2012-10-29 · diff ↗
R
R 2.15.0 released · 2012-03-30
R
R 2.14.0 released · 2011-10-31
1.2
2011-08-03 · diff ↗
R
R 2.13.0 released · 2011-04-13
R
R 2.12.0 released · 2010-10-15
R
R 2.11.0 released · 2010-04-22
R
R 2.10.0 released · 2009-10-26
R
R 2.9.0 released · 2009-04-17
1.1
2009-02-26
R
R 2.8.0 released · 2008-10-20

Package metadata

First published: 2009-02-26
Total releases: 6 / 17 yrs
License: GPL
Minimum R: ≥ 3.5.0
Bundled data: 776 KB / 2 files
Download size: 930 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Meta-Analysis Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("metaMA")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for metaMA version 3.1.3 [Data set]. HJJB, LLC. Data release v2026-08-15. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-15, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →