R Observatory: Metrics for mi4p version 1.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

mi4p

1.3

Multiple Imputation for Proteomics

0packages depend

3.5Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Frederic BertrandFirst published 2021-08-197 releasesCRAN page ↗GitHub ↗

A framework for multiple imputation for proteomics is proposed by Marie Chion, Christine Carapito and Frederic Bertrand (2021) doi:10.1371/journal.pcbi.1010420. It is dedicated to dealing with multiple imputation for proteomics.

Install

R (CRAN)pak (dev)Ubuntu (r2u)

install.packages("mi4p", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("mariechion/mi4p")

Development version from mariechion/mi4p. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-mi4p

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

Slowest check: 2.2 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.09

not tracked

Coverage

100%

Documentation · exports

7

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-02
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 2 earlier snapshots

ERROR2026-04-25
11 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 393 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 73%
Documented parameters: 100%
Return-value docs: 100%
References docs: 59%

Downloads

3.5K

CRAN downloads in the past year

Rank #10,199 · ~10/day · ~290/mo

Releases R versions

Daily download trend is not available in this view yet.

29430 days

93190 days

3.5K1 year

Compare downloads with other packages →

Also on152 r2u27 c2d4u

Repository

GitHub ↗ mariechion/mi4p

7Stars

0Forks

0Open issues

0Open PRs

0Releases

74Commits

3Contributors

License GPL-3.0 · 74 commits · Last activity 2025-09-19 · 0% stars, 30d

Stars over time

2025-07-19 · 72026-07-07 · 7

Repository practices

Upstream repositoryBeta

3 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/mariechion/mi4p on 2026-08-16.

Continuous integration (1)

GitHub Actions

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

15 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (7)

emmeans foreach imp4p impute limma mice stringr

LinkingTo (0)

none

Suggests (8)

Biobase knitr R.rsp markdown rmarkdown DAPAR ProteoMM testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (9)

Maintainer (1)

Frederic Bertrand

Maintainer, Author

Authors (3)

Frederic Bertrand

Maintainer, Author

Christine Carapito

Author

Marie Chion

Author

Contributors (6)

Hélène Borges

Contributor

Thomas Burger

Contributor

Quentin Giai-Gianetto

Contributor

Davis McCarthy

Contributor

Gordon Smyth

Contributor

Samuel Wieczorek

Contributor

Package Timeline

7 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.3Latest
2025-09-20 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
1.2
2024-10-03 · diff ↗
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
1.1
2023-03-23 · diff ↗
1.0
2022-06-13 · diff ↗
R
R 4.2.0 released · 2022-04-22
0.9
2022-03-23 · diff ↗
0.8
2022-03-15 · diff ↗
0.7
2021-08-19
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-08-19
Total releases: 7 / 5 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 3.5.0
Bundled data: 1.3 MB / 6 files
Download size: 2.0 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Missing Data Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("mi4p")

Format

Bertrand, F., Borges, H., Burger, T., Carapito, C., Chion, M., Giai-Gianetto, Q., McCarthy, D., Smyth, G., & Wieczorek, S. (2025). mi4p: Multiple Imputation for Proteomics (Version 1.3) [Computer software]. https://doi.org/10.32614/CRAN.package.mi4p

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for mi4p version 1.3 [Data set]. HJJB, LLC. Data release v2026-08-21. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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