ioncopy
Calling Copy Number Alterations in Amplicon Sequencing Data
v2.2.2
·
Aug 11, 2020
·
GPL-3
Description
Method for the calculation of copy numbers and calling of copy number alterations. The algorithm uses coverage data from amplicon sequencing of a sample cohort as input. The method includes significance assessment, correction for multiple testing and does not depend on normal DNA controls. Budczies (2016 Mar 15) <doi:10.18632/oncotarget.7451>.
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| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
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r-devel-linux-x86_64-debian-clang
CRAN incoming feasibility
Maintainer: ‘Jan Budczies <jan.budczies@med.uni-heidelberg.de>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Jan",
family = "Budczies",
role = c("aut", "cre"),
email = "jan.budczies@med.uni-heidelberg.de"),
person(given = "Eva",
family = "Romanovsky",
role = "aut"))
as necessary.
NOTE
r-devel-linux-x86_64-debian-gcc
CRAN incoming feasibility
Maintainer: ‘Jan Budczies <jan.budczies@med.uni-heidelberg.de>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Jan",
family = "Budczies",
role = c("aut", "cre"),
email = "jan.budczies@med.uni-heidelberg.de"),
person(given = "Eva",
family = "Romanovsky",
role = "aut"))
as necessary.
Check History
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE
r-devel-linux-x86_64-debian-clang
CRAN incoming feasibility
Maintainer: ‘Jan Budczies <jan.budczies@med.uni-heidelberg.de>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Jan",
family = "Budczies",
role = c("aut", "cre"),
email = "jan.budczies@med.uni-heidelberg.de"),
person(given = "Eva",
family = "Romanovsky",
role = "aut"))
as necessary.
NOTE
r-devel-linux-x86_64-debian-gcc
CRAN incoming feasibility
Maintainer: ‘Jan Budczies <jan.budczies@med.uni-heidelberg.de>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Jan",
family = "Budczies",
role = c("aut", "cre"),
email = "jan.budczies@med.uni-heidelberg.de"),
person(given = "Eva",
family = "Romanovsky",
role = "aut"))
as necessary.