R Observatory: Metrics for NBPSeq version 0.3.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

NBPSeq

0.3.1

Negative Binomial Models for RNA-Sequencing Data

0packages depend

5.8Kdownloads / year

–test coverage

11/13checks pass

Overview

About

Maintained by Yanming DiFirst published 2011-04-245 releasesCRAN page ↗

Negative Binomial (NB) models for two-group comparisons and regression inferences from RNA-Sequencing Data.

Install

R (CRAN)Ubuntu (r2u)

install.packages("NBPSeq", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-nbpseq

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 2.9 min · r-devel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

2

Dependencies · direct

Check history

NOTE2026-05-11
11 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-05-04
10 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 93%
Return-value docs: 100%
References docs: 26%

Downloads

5.8K

CRAN downloads in the past year

Rank #10,382 · ~16/day · ~485/mo

Releases R versions

Daily download trend is not available in this view yet.

23330 days

93290 days

5.8K1 year

Compare downloads with other packages →

Also on407 r2u1.3K bioconda23 c2d4u

Dependencies

Declared dependencies

1 external dependency (excludes base and recommended)

Depends (1)

R >= 3.00

Imports (2)

splinesqvalue

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (0)

Author records are not tracked yet for this package.

Listed in earlier versions (4)

Jeff H Chang.

no longer listed · 0.1.4 to 0.3.1

with contributions from Jason S Cumbie

no longer listed · 0.1.4 to 0.3.1

Yanming Di

no longer listed · 0.1.4 to 0.3.1

Daniel W Schafer

no longer listed · 0.1.4 to 0.3.1

Package Timeline

5 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.3.1Latest
2022-06-09 · current release · diff ↗
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
0.3.0
2014-04-15 · diff ↗
R
R 3.1.0 released · 2014-04-10
R
R 3.0.0 released · 2013-04-03

Show 6 earlier events

0.1.8
2012-11-19 · diff ↗
0.1.6
2012-05-26 · diff ↗
R
R 2.15.0 released · 2012-03-30
R
R 2.14.0 released · 2011-10-31
0.1.4
2011-04-24
R
R 2.13.0 released · 2011-04-13

Package metadata

First published: 2011-04-24
Total releases: 5 / 15 yrs
License: GPL-2 OSI
Minimum R: ≥ 3.00
Bundled data: 152 KB / 1 file
Download size: 205 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("NBPSeq")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for NBPSeq version 0.3.1 [Data set]. HJJB, LLC. Data release v2026-08-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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