R Observatory: Metrics for pinfsc50 version 1.3.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

pinfsc50

1.3.0Package record

Sequence ('FASTA'), Annotation ('GFF') and Variants ('VCF') for 17 Samples of 'P. Infestans" and 1 'P. Mirabilis'

1packages depend

64Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Brian J. KnausCRAN page ↗

Genomic data for the plant pathogen "Phytophthora infestans." It includes a variant file ('VCF'), a sequence file ('FASTA') and an annotation file ('GFF'). This package is intended to be used as example data for packages that work with genomic data.

Changes in 1.3.0

Released on CRAN on 202X-12-XX

Changed http to https
Added Encoding: UTF-8 and LazyData: false to DESCRIPTION
Ran usethis::use_package_doc()

From NEWS.md in the release

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("pinfsc50", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-pinfsc50

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-pinfsc50

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-pinfsc50

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 41 s · r-devel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-07-16
WARNING12 OK, 1 WARNING2026-07-15
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.3.0

READMEYes · 73 wordsVignettesNoNEWSYes · 100% structured · mentions 1.3.0Citation fileYes · cites a publicationWebsitenot declared in DESCRIPTION

Help pages: 2 (1 internal)includes a package overview page
Examples that run: 0%1 never run
Exported functions with examples: not tracked
Documented parameters: not tracked
Return-value docs: not tracked
Help pages citing references: 50%

How these are measured

Downloads

64K

CRAN downloads in the past year

Rank #1,649 · ~175/day · ~5.3K/mo

Releases R versions

Daily download trend is not available in this view yet.

3.4K30 days

13.4K90 days

64K1 year

Compare downloads with other packages →

Also on1.2K r2u9 autocran471.1K conda_forge190 bioconda134 c2d4u

How downloads are counted

Dependencies

Declared dependencies

0 external dependencies (excludes base and recommended)

Installing pinfsc50 adds no packages beyond those that come with R.

Depends (1)

R >= 3.2.1

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

23indirect

Imports 1

Depends, Imports or LinkingTo, most downloaded first

vcfR

How these are counted

Code & Tests

People & History

People (2)

Brian J. Knaus

Maintainer since 1.0.0 (2016), Author

Niklaus J. Grunwald

Author

Listed in earlier versions (2)

Brian J.

no longer listed · 1.0.0 to 1.3.0

Niklaus J.

no longer listed · 1.0.0 to 1.3.0

Releases (4)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.3.0Latest
record
2023-12-05 · current release · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
1.2.0
record
2020-06-03 · diff ↗
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
1.1.0
record
2016-12-02 · diff ↗ ·
removed 1 export
pattern:^[^\\.]
R
R 3.3.0 released · 2016-05-03
1.0.0
record
2016-01-29
R
R 3.2.0 released · 2015-04-16

Package metadata

First published: 2016-01-29
Total releases: 4 / 10 yrs
License: GPL
Minimum R: ≥ 3.2.1
Download size: 3.3 MB

Appears in task views

Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("pinfsc50")

The package provides a citation file that builds its entry when R runs it. Run citation() to see it.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for pinfsc50 version 1.3.0 [Data set]. HJJB, LLC. Data release v2026-10-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →