seqinr

Biological Sequences Retrieval and Analysis

v4.2-36 · Dec 8, 2023 · GPL (>= 2)

Description

Exploratory data analysis and data visualization for biological sequence (DNA and protein) data. Seqinr includes utilities for sequence data management under the ACNUC system described in Gouy, M. et al. (1984) Nucleic Acids Res. 12:121-127 <doi:10.1093/nar/12.1Part1.121>.

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CRAN Check Status

3 NOTE

11 OK

Show all 14 flavors

Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	OK	129.2s
r-devel-linux-x86_64-debian-gcc	OK	90s
r-devel-linux-x86_64-fedora-clang	OK	196.2s
r-devel-linux-x86_64-fedora-gcc	OK	191.5s
r-devel-macos-arm64	OK	31s
r-devel-windows-x86_64	OK	191s
r-oldrel-macos-arm64	NOTE
r-oldrel-macos-x86_64	NOTE	131s
r-oldrel-windows-x86_64	NOTE	215s
r-patched-linux-x86_64	OK	126.6s
r-release-linux-x86_64	OK	115.4s
r-release-macos-arm64	OK
r-release-macos-x86_64	OK	128s
r-release-windows-x86_64	OK	175s

Check details (3 non-OK)

NOTE r-oldrel-macos-arm64

installed package size

installed size is  5.5Mb
  sub-directories of 1Mb or more:
    data        1.4Mb
    sequences   1.9Mb

NOTE r-oldrel-macos-x86_64

installed package size

installed size is  5.6Mb
  sub-directories of 1Mb or more:
    data        1.4Mb
    sequences   1.9Mb

NOTE r-oldrel-windows-x86_64

installed package size

installed size is  5.3Mb
  sub-directories of 1Mb or more:
    data        1.4Mb
    sequences   1.9Mb

Check History

NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

NOTE r-oldrel-macos-arm64

installed package size

installed size is  5.5Mb
  sub-directories of 1Mb or more:
    data        1.4Mb
    sequences   1.9Mb

NOTE r-oldrel-macos-x86_64

installed package size

installed size is  5.6Mb
  sub-directories of 1Mb or more:
    data        1.4Mb
    sequences   1.9Mb

NOTE r-oldrel-windows-x86_64

installed package size

installed size is  5.3Mb
  sub-directories of 1Mb or more:
    data        1.4Mb
    sequences   1.9Mb

Reverse Dependencies (61)

depends

Autoplotprotein EnsCat LSPFP SMM plotprotein rnaCrosslinkOO

imports

AmyloGram AnnotationBustR AntibodyForests BioVizSeq CovidMutations EnvNJ EpiSemble GB5mcPred GenomicSig HextractoR LncFinder MAGNAMWAR OpEnCAST OpEnHiMR PTXQC RHybridFinder TmCalculator aLFQ adegenet agvgd alakazam beautier copyseparator debar drimmR gkmSVM gquad hoardeR inDAGO insect itol.toolkit longreadvqs metaCluster netmhc2pan orthGS prozor seq2R shazam shinyWGD signalHsmm smmR trace vhcub vivaldi

suggests

MiscMetabar RScelestial biomartr cubfits dartR dartR.base file2meco phangorn rtemis tidysq vhica

Dependency Network

Version History

new 4.2-36 Mar 10, 2026

updated 4.2-36 ← 4.2-30 diff Dec 7, 2023

updated 4.2-30 ← 4.2-23 diff Apr 4, 2023

updated 4.2-23 ← 4.2-16 diff Nov 27, 2022

updated 4.2-16 ← 4.2-8 diff May 18, 2022

updated 4.2-8 ← 4.2-5 diff Jun 8, 2021

updated 4.2-5 ← 4.2-4 diff Dec 16, 2020

updated 4.2-4 ← 3.6-1 diff Oct 9, 2020

updated 3.6-1 ← 3.4-5 diff Sep 6, 2019

updated 3.4-5 ← 3.3-6 diff Jul 31, 2017

updated 3.3-6 ← 3.3-3 diff Apr 5, 2017

updated 3.3-3 ← 3.3-2 diff Oct 12, 2016

updated 3.3-2 ← 3.3-1 diff Oct 6, 2016

updated 3.3-1 ← 3.3-0 diff Sep 6, 2016

updated 3.3-0 ← 3.2-0 diff Jul 18, 2016

updated 3.2-0 ← 3.1-5 diff Jul 6, 2016

updated 3.1-5 ← 3.1-3 diff Jun 7, 2016

updated 3.1-3 ← 3.1-2 diff Dec 16, 2014

updated 3.1-2 ← 1.0-6 diff Dec 1, 2014

updated 1.0-6 ← 1.0-5 diff Sep 5, 2006