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seqinr

Biological Sequences Retrieval and Analysis

v4.2-44 · Apr 28, 2026 · GPL (>= 2)
CRAN GitHub Mirror

Description

Exploratory data analysis and data visualization for biological sequence (DNA and protein) data. Seqinr includes utilities for sequence data management under the ACNUC system described in Gouy, M. et al. (1984) Nucleic Acids Res. 12:121-127 <doi:10.1093/nar/12.1Part1.121>.

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CRAN Check Status

13 OK
Show all 13 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 1 FAILURE Jun 8, 2026
FAILURE r-devel-linux-x86_64-debian-gcc

DESCRIPTION meta-information

ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 7, 2026
ERROR r-devel-linux-x86_64-debian-gcc

PDF version of manual

Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpmGdV7I/fileeb02b4b495f38': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpmGdV7I/fileeb02b4b495f38': No such file or directory
Error in file(con, "r") : cannot open the connection
OK 12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 25, 2026
NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE r-oldrel-macos-arm64

installed package size

installed size is  5.5Mb
  sub-directories of 1Mb or more:
    data        1.4Mb
    sequences   1.9Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is  5.6Mb
  sub-directories of 1Mb or more:
    data        1.4Mb
    sequences   1.9Mb
NOTE r-oldrel-windows-x86_64

installed package size

installed size is  5.3Mb
  sub-directories of 1Mb or more:
    data        1.4Mb
    sequences   1.9Mb

Reverse Dependencies (63)

depends

Autoplotprotein EnsCat LSPFP SMM plotprotein rnaCrosslinkOO

imports

AbSolution AmyloGram AnnotationBustR AntibodyForests BioVizSeq ClassifyITS CovidMutations EnvNJ EpiSemble GB5mcPred GenomicSig HextractoR LncFinder MAGNAMWAR OpEnCAST OpEnHiMR PTXQC RHybridFinder adegenet agvgd alakazam beautier copyseparator debar drimmR gkmSVM gquad inDAGO insect itol.toolkit longreadvqs metaCluster metacoder netmhc2pan orthGS prozor seq2R shazam shinyWGD signalHsmm smmR trace vhcub vivaldi

suggests

MiscMetabar RScelestial TmCalculator biomartr cubfits dartR dartR.base file2meco phangorn rtemis rtemis.a3 tidysq vhica

Dependency Network

Dependencies Reverse dependencies ade4 segmented Autoplotprotein EnsCat LSPFP SMM plotprotein rnaCrosslinkOO AbSolution AmyloGram AnnotationBustR AntibodyForests BioVizSeq ClassifyITS CovidMutations EnvNJ EpiSemble +48 more reverse deps seqinr

Version History

52 tracked
updated 4.2-44 ← 4.2-36 diff Apr 28, 2026
new 4.2-36 Mar 10, 2026
updated 4.2-36 ← 4.2-30 diff Dec 7, 2023
updated 4.2-30 ← 4.2-23 diff Apr 4, 2023
updated 4.2-23 ← 4.2-16 diff Nov 27, 2022
updated 4.2-16 ← 4.2-8 diff May 18, 2022
updated 4.2-8 ← 4.2-5 diff Jun 8, 2021
updated 4.2-5 ← 4.2-4 diff Dec 16, 2020
updated 4.2-4 ← 3.6-1 diff Oct 9, 2020
updated 3.6-1 ← 3.4-5 diff Sep 6, 2019
updated 3.4-5 ← 3.3-6 diff Jul 31, 2017
updated 3.3-6 ← 3.3-3 diff Apr 5, 2017
updated 3.3-3 ← 3.3-2 diff Oct 12, 2016
updated 3.3-2 ← 3.3-1 diff Oct 6, 2016
updated 3.3-1 ← 3.3-0 diff Sep 6, 2016