TCGAretriever
Retrieve Genomic and Clinical Data from CBioPortal Including TCGA Data
v1.10.3
·
Feb 23, 2026
·
GPL-3
Description
The Cancer Genome Atlas (TCGA) is a program aimed at improving our understanding of Cancer Biology. Several TCGA Datasets are available online. 'TCGAretriever' helps accessing and downloading TCGA data hosted on 'cBioPortal' via its Web Interface (see <https://www.cbioportal.org/> for more information).
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CRAN Check Status
14
OK
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 24, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 2 ERROR · 0 FAILURE Mar 20, 2026
ERROR
r-devel-linux-x86_64-debian-gcc
re-building of vignette outputs
Error(s) in re-building vignettes: ... --- re-building ‘get_started_with_TCGAretriever.Rmd’ using rmarkdown Error in .Call(R_curl_fetch_memory, enc2utf8(url), handle, nonblocking) : reached elapsed time limit Quitting from get_started_with_TCGAretriever.Rmd:47-55 [unnamed-chunk-1] Execution halted
ERROR
r-release-windows-x86_64
re-building of vignette outputs
Error(s) in re-building vignettes: --- re-building 'get_started_with_TCGAretriever.Rmd' using rmarkdown Error in .Call(R_curl_fetch_memory, enc2utf8(url), handle, nonblocking) : reached elapsed time limit Quitting from get_started_with_TCGAretriever.Rmd:47-55 [unnamed-chunk-1] Execution halted