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nanostringr

Performs Quality Control, Data Normalization, and Batch Effect Correction for 'NanoString nCounter' Data

v0.6.1 · May 5, 2025 · MIT + file LICENSE
CRAN GitHub Mirror

Description

Provides quality control (QC), normalization, and batch effect correction operations for 'NanoString nCounter' data, Talhouk et al. (2016) <doi:10.1371/journal.pone.0153844>. Various metrics are used to determine which samples passed or failed QC. Gene expression should first be normalized to housekeeping genes, before a reference-based approach is used to adjust for batch effects. Raw NanoString data can be imported in the form of Reporter Code Count (RCC) files.

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CRAN Check Status

14 OK
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Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Dependency Network

Dependencies Reverse dependencies assertthat ccaPP dplyr purrr rlang tibble tidyr nanostringr

Version History

new 0.6.1 Mar 10, 2026
updated 0.6.1 ← 0.6.0 diff May 4, 2025
updated 0.6.0 ← 0.5.0 diff Apr 25, 2025
updated 0.5.0 ← 0.4.2 diff Feb 4, 2025
updated 0.4.2 ← 0.4.1 diff Jun 10, 2024
updated 0.4.1 ← 0.4.0 diff Aug 14, 2023
updated 0.4.0 ← 0.3.0 diff Aug 19, 2022
updated 0.3.0 ← 0.2.0 diff May 24, 2022
updated 0.2.0 ← 0.1.4 diff Feb 5, 2021
updated 0.1.4 ← 0.1.3 diff May 8, 2019
updated 0.1.3 ← 0.1.2 diff Apr 23, 2019
updated 0.1.2 ← 0.1.1 diff Apr 2, 2019
updated 0.1.1 ← 0.1.0 diff Mar 24, 2019
new 0.1.0 Mar 14, 2019