R Observatory: Metrics for geno2proteo version 0.0.6

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

geno2proteo

0.0.6

Finding the DNA and Protein Sequences of Any Genomic or Proteomic Loci

0packages depend

2.6Kdownloads / year

–test coverage

11/13checks pass

Overview

About

Maintained by Yaoyong LiFirst published 2017-12-125 releasesCRAN page ↗

Using the DNA sequence and gene annotation files provided in 'ENSEMBL' https://www.ensembl.org/index.html, the functions implemented in the package try to find the DNA sequences and protein sequences of any given genomic loci, and to find the genomic coordinates and protein sequences of any given protein locations, which are the frequent tasks in the analysis of genomic and proteomic data.

Install

R (CRAN)Ubuntu (r2u)

install.packages("geno2proteo", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-geno2proteo

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 5.5 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.00

not tracked

Coverage

6

Dependencies · direct

Check history

NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSYes · 0% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: not tracked
Return-value docs: not tracked
References docs: 0%

Downloads

2.6K

CRAN downloads in the past year

Rank #14,734 · ~7/day · ~213/mo

Releases R versions

Daily download trend is not available in this view yet.

20530 days

70490 days

2.6K1 year

Compare downloads with other packages →

Also on138 r2u23 c2d4u

Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.0

Imports (6)

S4Vectors BiocGenerics GenomicRanges IRanges R.utils RUnit

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (0)

Author records are not tracked yet for this package.

Listed in earlier versions (1)

Yaoyong Li

no longer listed · 0.0.1 to 0.0.6

Package Timeline

5 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.0.6Latest
2022-06-13 · current release · diff ↗
R
R 4.2.0 released · 2022-04-22
0.0.5
2022-02-10 · diff ↗
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
0.0.3
2018-01-24 · diff ↗
0.0.2
2018-01-23 · diff ↗
0.0.1
2017-12-12
R
R 3.4.0 released · 2017-04-21

Package metadata

First published: 2017-12-12
Total releases: 5 / 9 yrs
License: Artistic-2.0 OSI
Minimum R: ≥ 3.0
Download size: 1.9 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("geno2proteo")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for geno2proteo version 0.0.6 [Data set]. HJJB, LLC. Data release v2026-08-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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