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Biostrings

Bioc current

Efficient manipulation of biological strings

v2.80.1 · software · Artistic-2.0
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 1.4 · May 17, 2004

Current · Requires R 4.6

1.0 In 45 of 49 releases 3.23

Description

Memory efficient string containers, string matching algorithms, and other utilities, for fast manipulation of large biological sequences or sets of sequences.

Code

Code metrics have not been computed for this package yet.

Topics

Software › BiologicalQuestion › SequenceMatching
Software › WorkflowStep › Alignment
Software › Technology › Sequencing
Software › ResearchField › Genetics
Software › Infrastructure › DataImport
Software › Infrastructure › DataRepresentation
Software › Infrastructure

Depended on by (687)

Bioconductor (620)

alabaster.files alabaster.string AllelicImbalance altcdfenvs amplican annotate AnnotationForge AnnotationHub AnnotationHubData appreci8R AssessORF ATACseqQC autonomics bambu BANDITS Basic4Cseq BBCAnalyzer BCRANK bcSeq BEAT betterChromVAR BgeeCall biovizBase BRAIN branchpointer BSgenome BSgenomeForge bsseq BUMHMM BUSpaRse +590 more

CRAN (67)

CleanBSequences SubVis AbSolution ActiveDriverWGS AntibodyForests BASiNET BASiNETEntropy BIGr CSESA DNAmotif DiPALM EpiSemble GB5mcPred GencoDymo2 GenomicSig MiscMetabar MitoHEAR OpEnCAST OpEnHiMR PACVr ProbeDeveloper QsRutils SQMtools SVAlignR TmCalculator VIProDesign alakazam biomartr copyseparator crispRdesignR +37 more

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