MiscMetabar
Miscellaneous Functions for Metabarcoding Analysis
Description
Facilitate the description, transformation, exploration, and reproducibility of metabarcoding analyses. 'MiscMetabar' is mainly built on top of the 'phyloseq', 'dada2' and 'targets' R packages. It helps to build reproducible and robust bioinformatics pipelines in R. 'MiscMetabar' makes ecological analysis of alpha and beta-diversity easier, more reproducible and more powerful by integrating a large number of tools. Important features are described in Taudière A. (2023) <doi:10.21105/joss.06038>.
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CRAN Check Status
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
Rd cross-references
Package unavailable to check Rd xrefs: ‘ANCOMBC’
package dependencies
Packages suggested but not available for checking: 'ANCOMBC', 'mia'
Check History
NOTE 13 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 30, 2026
package dependencies
Packages suggested but not available for checking: 'ANCOMBC', 'mia'
ERROR 12 OK · 1 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 27, 2026
whether package can be installed
Installation failed. See ‘/data/gannet/ripley/R/packages/tests-clang/MiscMetabar.Rcheck/00install.out’ for details.
package dependencies
Packages suggested but not available for checking: 'ANCOMBC', 'mia'
NOTE 13 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 27, 2026
package dependencies
Packages suggested but not available for checking: 'ANCOMBC', 'mia'
ERROR 12 OK · 1 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 26, 2026
examples
Running examples in ‘MiscMetabar-Ex.R’ failed The error most likely occurred in: > ### Name: subset_taxa_tax_control > ### Title: Subset taxa using a taxa control or distribution based method > ### Aliases: subset_taxa_tax_control > > ### ** Examples > > > subset_taxa_tax_control(data_fungi, + as.numeric(data_fungi@otu_table[, 300]), + min_diff_for_cutoff = 2 + ) Execution halted
package dependencies
Packages suggested but not available for checking: 'ANCOMBC', 'mia'
NOTE 13 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 16, 2026
package dependencies
Packages suggested but not available for checking: 'ANCOMBC', 'mia'
ERROR 12 OK · 1 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 12, 2026
package dependencies
Package required but not available: ‘phyloseq’ Packages suggested but not available for checking: 'ANCOMBC', 'gghalves', 'phyloseqGraphTest' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
package dependencies
Packages suggested but not available for checking: 'ANCOMBC', 'mia'
NOTE 13 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 11, 2026
package dependencies
Packages suggested but not available for checking: 'ANCOMBC', 'mia'
ERROR 12 OK · 1 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 10, 2026
package dependencies
Package required but not available: ‘phyloseq’ Packages suggested but not available for checking: 'gghalves', 'phyloseqGraphTest' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
package dependencies
Packages suggested but not available for checking: 'ANCOMBC', 'mia'