CINdex
Bioc removedChromosome Instability Index
Release Lineage
Entered 3.3 · May 4, 2016
Removed after 3.22 · Oct 30, 2025
Description
The CINdex package addresses important area of high-throughput genomic analysis. It allows the automated processing and analysis of the experimental DNA copy number data generated by Affymetrix SNP 6.0 arrays or similar high throughput technologies. It calculates the chromosome instability (CIN) index that allows to quantitatively characterize genome-wide DNA copy number alterations as a measure of chromosomal instability. This package calculates not only overall genomic instability, but also instability in terms of copy number gains and losses separately at the chromosome and cytoband level.
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Topics
People
- Yuriy Gusev author maintainer
- Krithika Bhuvaneshwar author
- Yuanjian Feng author
- Subha Madhavan author
- Ie-Ming Shih author
- Lei Song author
- Yue Wang author ths
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