Seqinfo
Bioc currentA simple S4 class for storing basic information about a collection of genomic sequences
Release Lineage
Entered 3.22 · Oct 30, 2025
Current · Requires R 4.6
Description
The Seqinfo class stores the names, lengths, circularity flags, and genomes for a particular collection of sequences. These sequences are typically the chromosomes and/or scaffolds of a specific genome assembly of a given organism. Seqinfo objects are rarely used as standalone objects. Instead, they are used as part of higher-level objects to represent their seqinfo() component. Examples of such higher-level objects are GRanges, RangedSummarizedExperiment, VCF, GAlignments, etc... defined in other Bioconductor infrastructure packages.
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Topics
Depended on by (239)
Bioconductor (239)
People
- Hervé Pagès author maintainer