R Observatory: Metrics for CleanBSequences version 2.3.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

CleanBSequences

2.3.0Package record

Curing of Biological Sequences

0packages depend

3.3Kdownloads / year

–test coverage

11/13flavors OK

Overview

About

Maintained by Florencia I. PozziCRAN page ↗

Curates biological sequences massively, quickly, without errors and without internet connection. Biological sequences curing is performed by aligning the forward and / or revers primers or ends of cloning vectors with the sequences to be cleaned. After the alignment, new subsequences are generated without biological fragment not desired by the user. Pozzi et al (2020) doi:10.1007/s00438-020-01671-z.

Install

R (CRAN)Ubuntu (r2u)

install.packages("CleanBSequences", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-cleanbsequences

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

2NOTE11OK

Check messages

NOTECRAN incoming feasibilityr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Maintainer: ‘Florencia I. Pozzi <florenciapoz@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Florencia", "I."),
                      family = "Pozzi",
                      role = c("aut", "cre"),
                      email = "florenciapoz@hotmail.com"),
               person(given = c("Silvina", "A."),
                      family = "Felitti",
                      role = "aut"))
as necessary.

CRAN check page ↗

Slowest check: 2.3 min · r-devel-windows-x86_64

Status changes

NOTE11 OK, 2 NOTENow
NOTE10 OK, 2 NOTE2026-04-25
ERROR11 OK, 2 NOTE, 1 ERROR2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 2.3.0

READMENoVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 4
Examples that run: 100%4 run in a plain check
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 0%

How these are measured

Downloads

3.3K

CRAN downloads in the past year

Rank #18,167 · ~9/day · ~277/mo

Releases R versions

Daily download trend is not available in this view yet.

28630 days

70990 days

3.3K1 year

Compare downloads with other packages →

Also on83 r2u

How downloads are counted

Dependencies

Declared dependencies

2 external dependencies (excludes base and recommended)

Installing CleanBSequences adds 0 packages. 2 more not on CRAN are not measured.

Depends (2)

pwalign Biostrings

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (from the free-text Author field) (2)

Florencia I. Pozzi

Silvina A. Felitti

Maintainer since 0.4.0 (2018)

Listed in earlier versions (3)

Show 3 peopleHide 3 people

Ivana G. Barbona

no longer listed · 0.4.0

Gisela Y. Green

no longer listed · 0.4.0

Gustavo R. Rodriguez

no longer listed · 0.4.0

Releases (3)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
2.3.0Latest
record
2024-05-09 · current release · diff ↗
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
1.4.0
record
2022-04-27 · diff ↗ ·
added 2 exports
DNAStringSetOPR, DNAStringSetTPR
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
0.4.0
record
2018-05-11
R
R 3.5.0 released · 2018-04-23

Package metadata

First published: 2018-05-11
Total releases: 3 / 8 yrs
License: GPL (>= 2) OSI
Download size: 3.3 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("CleanBSequences")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for CleanBSequences version 2.3.0 [Data set]. HJJB, LLC. Data release v2026-10-21. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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