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AnnotationHubData

Bioc current

Transform public data resources into Bioconductor Data Structures

v1.42.0 · software · Artistic-2.0
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 2.12 · Apr 4, 2013

Current · Requires R 4.6

1.0 In 27 of 49 releases 3.23

Description

These recipes convert a wide variety and a growing number of public bioinformatic data sets into easily-used standard Bioconductor data structures.

Code

Structure

Lines of code

7,062

Files

69

Compiled share

0%

Has compiled src

No

Language breakdown

R 5,567 (78.8%)Tests 1 (0%)Docs 1,458 (20.6%)Vignettes 36 (0.5%)

API

Exported functions

45

Internal functions

123

Recent export changes

v3.9+1 validDispatchClass
v3.8+5 getSpeciesList, validSpecies, suggestSpecies +2 more

Testing & CI

Has tests

Yes

Test-to-code ratio

0.00

testthat edition

–

CI present

Yes

CI type

["appveyor"]

PR gated

No

Docs

Return-value doc rate

90.9%

\dontrun example ratio

40%

Roxygen coverage

100%

Has pkgdown

No

NEWS present

Yes

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

13.3%

Unsafe pattern score

0

Dep constraint coverage

18.5%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

3.2.2

System requirements

–

C++ standard

–

License

Artistic-2.0

License flags

SPDX valid, OSI approved

History

Versions

27

First release

2013-04-03

Latest release

2026-04-28

Avg cadence

185 days

Cold removal rate

100%

Dep drift

33

LOC over versions

v2.12: 3,340 LOCv2.13: 3,811 LOCv2.14: 5,472 LOCv3.0: 6,431 LOCv3.1: 5,249 LOCv3.2: 6,112 LOCv3.3: 6,530 LOCv3.4: 6,482 LOCv3.5: 6,766 LOCv3.6: 6,220 LOCv3.7: 6,795 LOCv3.8: 7,058 LOCv3.9: 7,271 LOCv3.10: 7,401 LOCv3.11: 7,411 LOCv3.12: 7,287 LOCv3.13: 6,921 LOCv3.14: 6,923 LOCv3.15: 7,077 LOCv3.16: 7,077 LOCv3.17: 7,079 LOCv3.18: 7,079 LOCv3.19: 7,078 LOCv3.20: 7,078 LOCv3.21: 7,062 LOCv3.22: 7,062 LOCv3.23: 7,062 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Topics

Software › Infrastructure › DataImport

Depended on by (12)

Bioconductor (12)

AHMassBank ExperimentHubData HubPub AHEnsDbs EPICv2manifest EuPathDB GenomicState TENET.AnnotationHub humanHippocampus2024 smokingMouse homosapienDEE2CellScore ProteomicsAnnotationHubData

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