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BgeeCall

Bioc current

Automatic RNA-Seq present/absent gene expression calls generation

v1.28.0 · software · GPL-3 + file LICENSE
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Release Lineage

Entered 3.9 · May 3, 2019

Current · Requires R 4.6

1.0 In 15 of 49 releases 3.23

Description

BgeeCall allows to generate present/absent gene expression calls without using an arbitrary cutoff like TPM<1. Calls are generated based on reference intergenic sequences. These sequences are generated based on expression of all RNA-Seq libraries of each species integrated in Bgee (https://bgee.org).

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Topics

Software
Software › AssayDomain › GeneExpression
Software › Technology › Sequencing › RNASeq

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