genBaRcode

Analysis and Visualization Tools for Genetic Barcode Data

v1.2.8 · Mar 10, 2025 · LGPL

Description

Provides the necessary functions to identify and extract a selection of already available barcode constructs (Cornils, K. et al. (2014) <doi:10.1093/nar/gku081>) and freely choosable barcode designs from next generation sequence (NGS) data. Furthermore, it offers the possibility to account for sequence errors, the calculation of barcode similarities and provides a variety of visualisation tools (Thielecke, L. et al. (2017) <doi:10.1038/srep43249>).

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13 OK

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Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	OK	269.2s
r-devel-linux-x86_64-debian-gcc	OK	217.3s
r-devel-linux-x86_64-fedora-clang	OK	444.1s
r-devel-linux-x86_64-fedora-gcc	OK	504.6s
r-devel-windows-x86_64	OK	409s
r-oldrel-macos-arm64	OK
r-oldrel-macos-x86_64	OK	253s
r-oldrel-windows-x86_64	OK	465s
r-patched-linux-x86_64	OK	270.9s
r-release-linux-x86_64	OK
r-release-macos-arm64	OK	75s
r-release-macos-x86_64	OK	297s
r-release-windows-x86_64	OK	412s

Check History

OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026

ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026

ERROR r-devel-linux-x86_64-debian-gcc

package dependencies

Packages required but not available:
  'ggnetwork', 'ggraph', 'ggtree', 'ShortRead'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 10, 2026

ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE May 3, 2026

ERROR r-release-linux-x86_64

package dependencies

Packages required but not available: 'ggtree', 'ShortRead'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Dependency Network

Version History

11 tracked

new 1.2.8 Mar 10, 2026

updated 1.2.8 ← 1.2.7 diff Mar 9, 2025

updated 1.2.7 ← 1.2.6 diff Dec 10, 2023

updated 1.2.6 ← 1.2.5 diff Mar 15, 2023

updated 1.2.5 ← 1.2.4 diff May 26, 2022

updated 1.2.4 ← 1.2.3 diff Dec 1, 2020

updated 1.2.3 ← 1.2.2 diff May 7, 2020

updated 1.2.2 ← 1.2.0 diff Oct 24, 2019

updated 1.2.0 ← 1.1.0 diff Jul 7, 2019

updated 1.1.0 ← 1.0.0 diff Aug 9, 2018

new 1.0.0 Sep 20, 2017