Bioconductor Packages

CytoBands for AnnotationHub

EnsDbs for AnnotationHub

A toolkit for APA analysis using RNA-seq data

Automatic Statistical Identification in Complex Spectra

Investigates Allele Specific Expression

Automated spectraL Processing System for NMR

Bioconductor on the AnVIL compute environment

R / Bioconductor Support for the AnVIL Azure Platform

Generic functions for interacting with the AnVIL ecosystem

Provide functions to retrieve and report on usage expenses in NHGRI AnVIL (anvilproject.org).

The GCP R Client for the AnVIL

Publish Packages and Other Resources to AnVIL Workspaces

Run workflows implemented in Terra/AnVIL workspace

Facilities for Filtering Bioconductor Annotation Resources

Tools for building SQLite-based annotation data packages

Client to access AnnotationHub resources

Transform public data resources into Bioconductor Data Structures

Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet

Software infrastructure for efficient representation of full genomes and their SNPs

Forge your own BSgenome data package

R SDK for BaseSpace RESTful API

Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data

Clustering and Resolution Enhancement of Spatial Transcriptomes

Annotation and gene expression data retrieval from Bgee database. TopAnat, an anatomical entities Enrichment Analysis tool for UBERON ontology

Binding site defintion based on iCLIP data

Model-View-Controller (MVC) Classes That Use Biobase

Routines for the functional analysis of biological networks

Biobase: Base functions for Bioconductor

Read and write GFF and GTF files

Programmatic Access to the Azul API

Utility and internal functions for Bioconductor packages

Write, containerize, publish and version Quarto books with Bioconductor

Functions to process a bioconductor build report database

Bioconductor-specific package checks

Illustration of FHIR ingestion and transformation using R

Manage Files Across Sessions

S4 generic functions used in Bioconductor

basilisk and hail

View Bioconductor Package Maintainer Information Interactively

Bioconductor facilities for parallel evaluation

An interactive Shiny dashboard for Bioconductor package maintainers

Collection of simple tools for learning about Bioconductor Packages

interface to python sklearn via Rstudio reticulate

Set the appropriate version of Bioconductor packages

Efficient manipulation of biological strings

A matrix data storage object held in temporary files

Microarray Data related methods that utlize BufferedMatrix objects

Bumpy Matrix of Non-Scalar Objects

Analysis of Cap Analysis of Gene Expression (CAGE) data using Bioconductor

Cytometry dATa anALYSis Tools