OpEnCAMeO

0.1.1

Optimized Ensemble Predictor for 'C' and 'A' Methylation in Organism

0packages depend

–downloads / year

–test coverage

7/7checks pass

Overview

About

Maintained by Abhik SarkarFirst published 2026-07-301 releasesCRAN page ↗

DNA methylation is an important epigenetic process that regulates gene activity through chemical modifications of DNA without changing its sequence. 'OpEnCAMeO' is a organism based ensemble model for prediction of 4mC, 6mA and No methylation sites directly from DNA sequences. It combines multiple machine learning algorithms trained on Bacteria (Escherichia coli), Fungi (Saccharomyces cerevisiae) and Nematode (Caenorhabditis elegans) as reference models to deliver accurate predictions. This methodology is being inspired by the ensemble algorithm for methylation prediction developed by Sinha et al. (2025) doi:10.1101/2025.11.10.687509.

Install

R (CRAN)

install.packages("OpEnCAMeO", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Health

CRAN checks

7OK

Slowest check: 3.5 min · r-devel-linux-x86_64-fedora-clang

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-07-31
7 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 0%
Documented parameters: 100%
Return-value docs: 100%
References docs: 100%

Downloads

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Dependencies

Declared dependencies

12 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (8)

Biostrings seqinr stringr tibble entropy ftrCOOLstatselmNNRcpp

LinkingTo (0)

none

Suggests (5)

caret kernlab ranger xgboost gbm

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

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Nothing depends on this yet.

Code & Tests

People & History

People (6)

Maintainer (1)

Abhik Sarkar

Author, Maintainer

Authors (6)

Abhik Sarkar

Author, Maintainer

Sunil Archak

Author

Dwijesh Chandra Mishra

Author

Sneha Murmu

Author

Dipro Sinha

Author

Md Yeasin

Author

Package Timeline

1 release. R releases are shown for context.

0.1.1Latest
2026-07-30 · current release
R
R 4.6.0 released · 2026-04-24

Package metadata

First published: 2026-07-30
Total releases: 1 / 1 yrs
License: GPL-3 OSI
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

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