R Observatory: Metrics for biovizBase version 1.60.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

biovizBase

Bioc current

Basic graphic utilities for visualization of genomic data.

v1.60.0 · software · Artistic-2.0

View on Bioconductor ↗ Source ↗

Release Lineage

Entered 2.9 · Nov 1, 2011

Current · Requires R 4.6

1.0 In 30 of 49 releases 3.23

Description

The biovizBase package is designed to provide a set of utilities, color schemes and conventions for genomic data. It serves as the base for various high-level packages for biological data visualization. This saves development effort and encourages consistency.

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

73 33 exported

Complexity

3.3 avg / 33 max

Call network

73 nodes / 43 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

Call graph

Open call graph →

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Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

5,786

Files

93

Compiled share

1.5%

Has compiled src

Yes

Language breakdown

R 3,275 (56.6%)C/C++/src 84 (1.5%)Tests 1 (0%)Docs 1,535 (26.5%)Vignettes 891 (15.4%)

API

Exported functions

37

Internal functions

35

Testing & CI

Has tests

Yes

Test-to-code ratio

0.00

testthat edition

–

CI present

No

CI type

[]

PR gated

No

Docs

Roxygen coverage

100%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

66.7%

Unsafe pattern score

0

Dep constraint coverage

52.2%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

3.5.0

System requirements

–

C++ standard

–

License

Artistic-2.0

License flags

SPDX valid, OSI approved

History

Versions

30

First release

2012-01-30

Latest release

2026-04-28

Avg cadence

182 days

Cold removal rate

100%

Dep drift

16

LOC over versions

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSYes · 0% structuredCode of conductNoContributing guideNo

Examples that run: 86%
Documented parameters: 97%
Return-value docs: 100%
References docs: 3%

Topics

Software › Infrastructure

Software › WorkflowStep › Visualization

Software › WorkflowStep › Preprocessing

Depended on by (22)

CRAN (1)

Signac

People

Michael Lawrence author ths maintainer
Dianne Cook author ths
Johannes Rainer contributor
Tengfei Yin author

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("biovizBase")

Format

Lawrence, M., Cook, D., Rainer, J., & Yin, T. (2026). biovizBase: Basic graphic utilities for visualization of genomic data. (Version 1.60.0) [Computer software]. https://bioconductor.org/packages/biovizBase

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for biovizBase version 1.60.0 [Data set]. HJJB, LLC. Data release v2026-08-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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