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XVector

Bioc current

Foundation of external vector representation and manipulation in Bioconductor

v0.52.0 · software · Artistic-2.0

Release Lineage

Entered 2.13 · Oct 15, 2013

Current · Requires R 4.6

1.0 In 26 of 49 releases 3.23

Description

Provides memory efficient S4 classes for storing sequences "externally" (e.g. behind an R external pointer, or on disk).

Test coverage

Line coverage

Expression

Tests / Examples

Functions

335 18 exported

Complexity

3.2 avg / 14 max

Call network

335 nodes / 351 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

11,079

Files

72

Compiled share

55.2%

Has compiled src

Yes

Language breakdown

R 3,714 (33.5%)C/C++/src 6,111 (55.2%)Tests 2 (0%)Docs 1,252 (11.3%)

API

Exported functions

24

Internal functions

98

Recent export changes

v3.8+1 open_input_files
v3.7−1 unlist_list_of_XVectorList

Testing & CI

Has tests

Yes

Test-to-code ratio

0.00

testthat edition

CI present

No

CI type

[]

PR gated

No

Docs

Roxygen coverage

79.2%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

0%

Unsafe pattern score

0

Dep constraint coverage

27.3%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

4.0.0

System requirements

C++ standard

License

Artistic-2.0

License flags

SPDX valid, OSI approved

History

Versions

26

First release

2013-10-14

Latest release

2026-04-28

Avg cadence

182 days

Cold removal rate

100%

Dep drift

6

LOC over versions

v2.13: 8,802 LOCv2.14: 9,022 LOCv3.0: 9,032 LOCv3.1: 9,028 LOCv3.2: 9,799 LOCv3.3: 9,647 LOCv3.4: 9,695 LOCv3.5: 9,695 LOCv3.6: 10,644 LOCv3.7: 10,545 LOCv3.8: 10,581 LOCv3.9: 10,811 LOCv3.10: 10,811 LOCv3.11: 10,812 LOCv3.12: 11,026 LOCv3.13: 11,026 LOCv3.14: 11,026 LOCv3.15: 11,026 LOCv3.16: 11,029 LOCv3.17: 11,029 LOCv3.18: 11,021 LOCv3.19: 11,021 LOCv3.20: 11,021 LOCv3.21: 11,059 LOCv3.22: 11,079 LOCv3.23: 11,079 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

Documentation
READMEYes · 43 wordsVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo
Examples that run
100%
Documented parameters
14%
Return-value docs
20%
References docs
0%

Topics

Depended on by (44)

CRAN (2)

People

Hervé Pagès

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("XVector")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

APA

Balamuta, J. J. (2026). R Observatory: Metrics for XVector version 0.52.0 [Data set]. HJJB, LLC. Data release v2026-08-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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