R Observatory: Metrics for metaCluster version 0.1.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

metaCluster

0.1.1Package record

Metagenomic Clustering

0packages depend

2.7Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Dipro SinhaCRAN page ↗

Clustering in metagenomics is the process of grouping of microbial contigs in species specific bins. This package contains functions that extract genomic features from metagenome data, find the number of clusters for that given data and find the best clustering algorithm for binning.

Install

R (CRAN)Ubuntu (r2u)

install.packages("metaCluster", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-metacluster

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 3.2 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.1

READMENoVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 5
Examples that run: 100%4 run in a plain check
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 0%

How these are measured

Downloads

2.7K

CRAN downloads in the past year

Rank #16,423 · ~7/day · ~227/mo

Releases R versions

Daily download trend is not available in this view yet.

32030 days

75090 days

2.7K1 year

Compare downloads with other packages →

Also on67 r2u

How downloads are counted

Dependencies

Declared dependencies

5 external dependencies (excludes base and recommended)

Installing metaCluster adds 118 packages (58 with compiled code, 121 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, bslib 5.6 MB. 1 more not on CRAN is not measured.

Depends (1)

R >= 3.6

Imports (6)

factoextraclusterdbscan dplyr seqinr Biostrings

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (5)

Dipro Sinha

Author, Maintainer since 0.1.0 (2021)

Sayanti Guha Majumdar

Author

Dwijesh Chandra Mishra

Author · added in 0.1.1

Anu Sharma

Author

Md Yeasin

Author · added in 0.1.1

Releases (2)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
0.1.1Latest
record
2024-06-20 · current release · diff ↗
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
0.1.0
record
2021-09-30
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-09-30
Total releases: 2 / 5 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.6
Bundled data: 30 KB / 1 file
Download size: 37 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("metaCluster")

Format

Sinha, D., Guha Majumdar, S., Mishra, D. C., Sharma, A., & Yeasin, M. (2024). metaCluster: Metagenomic Clustering (Version 0.1.1) [Computer software]. https://doi.org/10.32614/CRAN.package.metaCluster

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for metaCluster version 0.1.1 [Data set]. HJJB, LLC. Data release v2026-10-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →