GenomicFeatures
Bioc currentQuery the gene models of a given organism/assembly
Release Lineage
Entered 2.5 · Oct 28, 2009
Current · Requires R 4.6
Description
Extract the genomic locations of genes, transcripts, exons, introns, and CDS, for the gene models stored in a TxDb object. A TxDb object is a small database that contains the gene models of a given organism/assembly. Bioconductor provides a small collection of TxDb objects in the form of ready-to-install TxDb packages for the most commonly studied organisms. Additionally, the user can easily make a TxDb object (or package) for the organism/assembly of their choice by using the tools from the txdbmaker package.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
169 12 exported
Complexity
2.9 avg / 20 max
Call network
169 nodes / 194 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
8,883
Files
85
Compiled share
2.9%
Has compiled src
Yes
Language breakdown
API
Exported functions
36
Internal functions
143
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
61.5%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.5.0
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
34
First release
2009-10-27
Latest release
2026-04-28
Avg cadence
185 days
Cold removal rate
100%
Dep drift
28
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 88%
- Return-value docs
- 100%
- References docs
- 0%
Topics
Depended on by (326)
Bioconductor (321)
CRAN (5)
People
- H. Pagès author maintainer
- P. Aboyoun author
- S. Arora contributor
- M. Carlson author
- S. Falcon author
- M. Lawrence author
- J. MacDonald contributor
- M. Morgan author
- V. Obenchain author
- M. Ramos contributor
- S. Saini contributor
- D. Sarkar author
- P. Shannon contributor
- L. Shepherd contributor
- D. Tenenbaum contributor
- D. Van Twisk contributor
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("GenomicFeatures")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.