BSgenomeForge
Bioc currentForge your own BSgenome data package
Release Lineage
Entered 3.17 · Apr 26, 2023
Current · Requires R 4.6
Description
A set of tools to forge BSgenome data packages. Supersedes the old seed-based tools from the BSgenome software package. This package allows the user to create a BSgenome data package in one function call, simplifying the old seed-based process.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
69 10 exported
Complexity
4.9 avg / 17 max
Call network
69 nodes / 85 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
4,343
Files
195
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
12
Internal functions
56
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.14
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
12.5%
Unsafe pattern score
12
Dep constraint coverage
42.9%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.3.0
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
7
First release
2023-06-20
Latest release
2026-04-28
Avg cadence
170 days
Cold removal rate
–
Dep drift
3
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 8includes a package overview page
- Examples that run
- 100%8 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 79%
- Return-value docs
- 86%
- Help pages citing references
- 0%
BUG FIXES
- Fix issue in internal helper drop_rows_with_NA_accns()
- Remove outdated links from inst/pkgtemplates/BSgenome_datapkg/man/package.Rd and inst/pkgtemplates/MaskedBSgenome_datapkg/man/package.Rd
From NEWS in the release
Repository practices
Checks run against github.com/bioconductor/bsgenomeforge on 2026-10-21.
No development-tooling practices detected in the upstream repository.
Datasets
Topics
Suggested by (2)
People
- Hervé Pagès author maintainer
- Emmanuel Chigozie Elendu contributor
- Atuhurira Kirabo Kakopo author
- Prisca Chidimma Maduka contributor
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("BSgenomeForge")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.