Marcel Ramos

3 packages On CRAN since Jun 2018 (8 years) · last active 5 months ago On Bioconductor since May 2004 (22 years) · last active 6 months ago 0000-0002-3242-0582

R-Universe CRAN Search

Downloads

315.2K

Last 30 days

929.5K

Last 90 days

3.3M

Last year

Average trend: -12.2% (30d vs prior 30d)

Top Packages by Downloads

BiocManager

313.3K

rjsoncons

1.2K

rapiclient

725

Portfolio Check Status

Aggregate CRAN check results across 2 maintained packages.

NOTE

Recent Activity

rjsoncons updated v1.3.3 Jun 3, 2026

Query, Pivot, Patch, and Validate 'JSON' and 'NDJSON'

BiocManager updated v1.30.27 Nov 13, 2025

Access the Bioconductor Project Package Repository

BiocManager updated v1.30.26 Jun 4, 2025

Access the Bioconductor Project Package Repository

rjsoncons updated v1.3.2 Mar 14, 2025

Query, Pivot, Patch, and Validate 'JSON' and 'NDJSON'

rapiclient updated v0.1.8 Sep 29, 2024

Dynamic OpenAPI/Swagger Client

BiocManager updated v1.30.25 Aug 27, 2024

Access the Bioconductor Project Package Repository

rapiclient updated v0.1.6 Aug 20, 2024

Dynamic OpenAPI/Swagger Client

BiocManager updated v1.30.24 Aug 19, 2024

Access the Bioconductor Project Package Repository

rjsoncons updated v1.3.1 Jul 6, 2024

Query, Pivot, Patch, and Validate 'JSON' and 'NDJSON'

rapiclient updated v0.1.5 May 20, 2024

Dynamic OpenAPI/Swagger Client

Maintained Packages

2 packages

Package	Title	Downloads	Version
BiocManager 313.3K downloads/30d	Access the Bioconductor Project Package Repository	313.3K	1.30.27
rapiclient 725 downloads/30d	Dynamic OpenAPI/Swagger Client	725	0.1.8

Co-authored Packages

1 package

Package	Title	Downloads	Version
rjsoncons 1.2K downloads/30d	Query, Pivot, Patch, and Validate 'JSON' and 'NDJSON'	1.2K	1.3.3

Bioconductor Packages

52 packages

Package	Title	Category	Version
AnVIL Bioc	Bioconductor on the AnVIL compute environment	software	1.24.1
AnVILAz Bioc	R / Bioconductor Support for the AnVIL Azure Platform	software	1.6.0
AnVILBase Bioc	Generic functions for interacting with the AnVIL ecosystem	software	1.6.0
AnVILGCP Bioc	The GCP R Client for the AnVIL	software	1.6.2
AnVILPublish Bioc	Publish Packages and Other Resources to AnVIL Workspaces	software	1.22.0
AnVILVRS Bioc removed	Expose the vrs_anvil_toolkit Python package via R		0.99.19
AnVILWorkflow Bioc	Run workflows implemented in Terra/AnVIL workspace	software	1.12.1
Bioc.gff Bioc	Read and write GFF and GTF files	software	1.2.0
BiocAzul Bioc	Programmatic Access to the Azul API	software	1.0.3
BiocBaseUtils Bioc	Utility and internal functions for Bioconductor packages	software	1.14.2
BiocCheck Bioc	Bioconductor-specific package checks	software	1.48.1
BiocDeveloper Bioc removed	General utility functions for developing Bioconductor packages		0.99.9
BiocHubsShiny Bioc	View AnnotationHub and ExperimentHub Resources Interactively	software	1.12.0
BiocIO Bioc	Standard Input and Output for Bioconductor Packages	software	1.22.0
BiocPkgDash Bioc	An interactive Shiny dashboard for Bioconductor package maintainers	software	1.0.0
BiocPkgTools Bioc	Collection of simple tools for learning about Bioconductor Packages	software	1.30.1
BiocUtils Bioc removed	General utility functions for Bioconductor packages		0.99.4
BiocVersion Bioc	Set the appropriate version of Bioconductor packages	software	3.23.1
Biostrings Bioc	Efficient manipulation of biological strings	software	2.80.2
CNVRanger Bioc	Summarization and expression/phenotype association of CNV ranges	software	1.28.1
EnrichmentBrowser Bioc	Seamless navigation through combined results of set-based and network-based enrichment analysis	software	2.42.0
GCPtools Bioc	Tools for working with gcloud and gsutil	software	1.2.1
GNOSIS Bioc	Genomics explorer using statistical and survival analysis in R	software	1.10.0
GSEABenchmarkeR Bioc	Reproducible GSEA Benchmarking	software	1.32.0
GenomicDataCommons Bioc	NIH / NCI Genomic Data Commons Access	software	1.36.0
GenomicRanges Bioc	Representation and manipulation of genomic intervals	software	1.64.0
HCAMatrixBrowser Bioc removed	Extract and manage matrix data from the Human Cell Atlas project		1.2.0
HMP16SData Bioc	16S rRNA Sequencing Data from the Human Microbiome Project	experiment	1.32.0
KEGGREST Bioc	Client-side REST access to the Kyoto Encyclopedia of Genes and Genomes (KEGG)	software	1.52.2
MicrobiomeBenchmarkData Bioc	Datasets for benchmarking in microbiome research	experiment	1.14.0
MultiAssayExperiment Bioc	Software for the integration of multi-omics experiments in Bioconductor	software	1.38.0
RTCGAToolbox Bioc	A new tool for exporting TCGA Firehose data	software	2.42.0
RaggedExperiment Bioc	Representation of Sparse Experiments and Assays Across Samples	software	1.36.0
SingleCellMultiModal Bioc	Integrating Multi-modal Single Cell Experiment datasets	experiment	1.24.0
TCGAutils Bioc	TCGA utility functions for data management	software	1.32.2
TENxIO Bioc	Import methods for 10X Genomics files	software	1.14.0
UniProt.ws Bioc	R Interface to UniProt Web Services	software	2.52.1
VisiumIO Bioc	Import Visium data from the 10X Space Ranger pipeline	software	1.8.0
XeniumIO Bioc	Import and represent Xenium data from the 10X Xenium Analyzer	software	1.4.0
biocthis Bioc	Automate package and project setup for Bioconductor packages	software	1.22.0
cBioPortalData Bioc	Exposes and Makes Available Data from the cBioPortal Web Resources	software	2.24.0
curatedMetagenomicData Bioc	Curated Metagenomic Data of the Human Microbiome	experiment	3.20.0
curatedTCGAData Bioc	Curated Data from The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects	experiment	1.34.0
doppelgangR Bioc	Identify likely duplicate samples from genomic or meta-data	software	1.40.0
imageFeatureTCGA Bioc	Import features from hovernet, provgigapath into a MultiAssayExperiment	software	1.0.0
imageTCGA Bioc	TCGA Diagnostic Image Database Explorer	software	1.4.0
imageTCGAutils Bioc	Utility functions for working with histopathology images	software	1.0.0
interactiveDisplayBase Bioc removed	Base package for enabling powerful shiny web displays of Bioconductor objects		1.48.0
lefser Bioc	R implementation of the LEfSE method for microbiome biomarker discovery	software	1.22.0
mia Bioc	Microbiome analysis	software	1.20.0
shinybiocloader Bioc	Use a Shiny Bioconductor CSS loader	software	1.2.0
terraTCGAdata Bioc	OpenAccess TCGA Data on Terra as MultiAssayExperiment	software	1.16.0

Package repositories

Repositories of packages Marcel Ramos maintains where an AI coding tool was found. Other people commit to these repositories too, so each line describes the repository, not Marcel Ramos's own work.

Bioconductor/AnVIL ↗(organization: Bioconductor)
Packages: AnVIL
- Claude Codefirst seen 2026-04-24
  Named in .Rbuildignore: .claude
- Gemini CLIfirst seen 2026-04-24
  Commits: some crediting it in the message, count not recorded
Bioconductor/AnVILAz ↗(organization: Bioconductor)
Packages: AnVILAz
- Claude Codefirst seen on or before 2026-04-24
  Named in .Rbuildignore: .claude
- Gemini CLIfirst seen 2026-04-24
  Commits: some crediting it in the message, count not recorded
Bioconductor/AnVILBase ↗(organization: Bioconductor)
Packages: AnVILBase
- Gemini CLIfirst seen 2026-04-24
  Commits: at least 1 crediting it in the message
Bioconductor/AnVILGCP ↗(organization: Bioconductor)
Packages: AnVILGCP
- Claude Codefirst seen 2026-04-24
  Named in .Rbuildignore: .claude
- Gemini CLIfirst seen 2026-04-24
  Commits: at least 1 crediting it in the message
Bioconductor/BiocBaseUtils ↗(organization: Bioconductor)
Packages: BiocBaseUtils
- Claude Codefirst seen on or before 2026-05-08
  Named in .Rbuildignore: .claude
- Gemini CLIfirst seen 2026-05-08
  Commits: at least 1 crediting it in the message
Bioconductor/BiocCheck ↗(organization: Bioconductor)
Packages: BiocCheck
- Claude Codefirst seen 2026-05-28
  Named in .Rbuildignore: .claude
  Commits: some crediting it in the message, count not recorded
- Gemini CLIfirst seen 2026-05-11
  Commits: some crediting it in the message, count not recorded
- Claude Code
  Pull requests: 1 from outside contributors, first on 2026-08-31
Bioconductor/BiocIO ↗(organization: Bioconductor)
Packages: BiocIO
- Claude Codefirst seen 2026-04-28
  Commits: at least 1 crediting it in the message
Bioconductor/BiocManager ↗(organization: Bioconductor)
Packages: BiocManager
- GitHub Copilotfirst seen 2026-07-27
  Pull request: opened by its own account
  Commits: 1 by its own account · at least 1 crediting it in the message
waldronlab/SingleCellMultiModal ↗(organization: waldronlab)
Packages: SingleCellMultiModal
- Gemini CLIfirst seen 2026-05-20
  Commits: at least 1 crediting it in the message
waldronlab/XeniumIO ↗(organization: waldronlab)
Packages: XeniumIO
- GitHub Copilotfirst seen 2026-03-24
  Pull request: opened by its own account
  Commits: 1 by its own account · at least 1 crediting it in the message

Finding nothing does not mean no tool was used. How this is detected.

Roles

Maintains 2

Co-authors 1

Contributes 1

Impact

packages depend on their work

dependency h-index

packages with 10+ dependents

Most depended on

BiocManager 22 deps

Frequent Collaborators

Martin Morgan 3 pkgs

Alexandru Mahmoud 1 pkg

Daniel Parker 1 pkg

Darko Bergant 1 pkg

Sean Davis 1 pkg

View collaborator network →

Career

On CRAN since Jun 2018 (8 years) · last active 5 months ago

On Bioconductor since May 2004 (22 years) · last active 6 months ago

Links

ORCID Profile R-Universe CRAN Maintainer Search