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maftools

Bioc current

Summarize, Analyze and Visualize MAF Files

v2.28.0 · software · MIT + file LICENSE
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.4 · Oct 18, 2016

Current · Requires R 4.6

1.0 In 20 of 49 releases 3.23

Description

Analyze and visualize Mutation Annotation Format (MAF) files from large scale sequencing studies. This package provides various functions to perform most commonly used analyses in cancer genomics and to create feature rich customizable visualzations with minimal effort.

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Topics

Software › Infrastructure › DataRepresentation
Software › Technology › Sequencing › DNASeq
Software › WorkflowStep › Visualization
Software › BiologicalQuestion › DriverMutation
Software › BiologicalQuestion › VariantAnnotation
Software › StatisticalMethod › FeatureExtraction
Software › StatisticalMethod › Classification
Software › BiologicalQuestion › SomaticMutation
Software › Technology › Sequencing
Software › ResearchField › FunctionalGenomics
Software › StatisticalMethod › Survival

Depended on by (18)

Bioconductor (12)

CaMutQC CIMICE GenomicDataCommons GNOSIS katdetectr MultiAssayExperiment musicatk survtype TCGAbiolinks TCGAWorkflow bamSliceR TCGAbiolinksGUI

CRAN (6)

Rediscover SMDIC aplotExtra sigminer ssMutPA IOBR

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