Skip to content

annotate

Bioc current

Annotation for microarrays

v1.90.0 · software · Artistic-2.0
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 1.0 · Jan 5, 2001

Current · Requires R 4.6

1.0 In 49 of 49 releases 3.23

Description

Using R enviroments for annotation.

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

103 81 exported

Complexity

4.2 avg / 63 max

Call network

103 nodes / 64 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

Call graph

Open call graph →
Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

8,754

Files

113

Compiled share

0%

Has compiled src

No

Language breakdown

R 3,245 (37.1%)Tests 1 (0%)Docs 2,833 (32.4%)Vignettes 2,675 (30.6%)

API

Exported functions

85

Internal functions

23

Testing & CI

Has tests

Yes

Test-to-code ratio

0.00

testthat edition

–

CI present

No

CI type

[]

PR gated

No

Docs

Return-value doc rate

91.5%

\dontrun example ratio

5.5%

Roxygen coverage

92.9%

Has pkgdown

No

NEWS present

No

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

21.4%

Unsafe pattern score

27

Dep constraint coverage

18.2%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

2.10

System requirements

–

C++ standard

–

License

Artistic-2.0

License flags

SPDX valid, OSI approved

History

Versions

46

First release

2002-05-02

Latest release

2026-04-28

Avg cadence

182 days

Cold removal rate

90.9%

Dep drift

18

LOC over versions

v1.0: 1,328 LOCv1.4: 3,127 LOCv1.5: 4,439 LOCv1.6: 4,707 LOCv1.7: 4,709 LOCv1.8: 4,810 LOCv1.9: 5,764 LOCv2.0: 6,045 LOCv2.1: 5,927 LOCv2.2: 5,733 LOCv2.3: 6,027 LOCv2.4: 6,192 LOCv2.5: 6,229 LOCv2.6: 6,256 LOCv2.7: 6,266 LOCv2.8: 6,397 LOCv2.9: 6,387 LOCv2.10: 6,394 LOCv2.11: 6,131 LOCv2.12: 6,133 LOCv2.13: 6,133 LOCv2.14: 9,124 LOCv3.0: 9,179 LOCv3.1: 9,040 LOCv3.2: 9,050 LOCv3.3: 9,052 LOCv3.4: 9,058 LOCv3.5: 9,058 LOCv3.6: 9,056 LOCv3.7: 9,103 LOCv3.8: 9,103 LOCv3.9: 9,103 LOCv3.10: 9,103 LOCv3.11: 9,101 LOCv3.12: 9,128 LOCv3.13: 8,873 LOCv3.14: 8,873 LOCv3.15: 8,873 LOCv3.16: 8,873 LOCv3.17: 8,873 LOCv3.18: 8,873 LOCv3.19: 8,830 LOCv3.20: 8,830 LOCv3.21: 8,830 LOCv3.22: 8,754 LOCv3.23: 8,754 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Topics

Software › WorkflowStep › Annotation
Software › WorkflowStep › Pathways
Software › WorkflowStep › Pathways › GO

Depended on by (273)

Bioconductor (269)

BiocGenerics CAFE Category categoryCompare ChromHeatMap CNEr codelink debrowser DrugVsDisease genefilter geneplotter GenomicRanges GlobalAncova globaltest GOstats GSAR GSEABase GSEAlm hmdbQuery idiogram lumi metagenomeSeq methylumi MGFM MGFR MLInterfaces MLP pageRank phenoTest PhosR +239 more

CRAN (4)

geneExpressionFromGEO clValid limorhyde maGUI

People