annotate
Bioc currentAnnotation for microarrays
Release Lineage
Entered 1.0 · Jan 5, 2001
Current · Requires R 4.6
Description
Using R enviroments for annotation.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
103 81 exported
Complexity
4.2 avg / 63 max
Call network
103 nodes / 64 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
8,754
Files
112
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
85
Internal functions
23
Testing
Has tests
Yes
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
92.9%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
21.4%
Unsafe pattern score
27
Dep constraint coverage
18.2%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
2.10
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
46
First release
2002-05-02
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
90.9%
Dep drift
18
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 58
- Examples that run
- 91%50 run in a plain check (3 of them under a condition) · 3 never run · 2 hold no code
- Exported functions with examples
- 96%
- Documented parameters
- 100%
- Return-value docs
- 91%
- Help pages citing references
- 21%
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
No development-tooling practices detected in the Bioconductor git repository.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| hgByChroms | list | 24 elements | No other package |
| hgCLengths | vector | 24 elements | No other package |
| hgu95AProbLocs | – | – | – |
| hgu95Achroloc | – | – | – |
| hgu95Achrom | – | – | – |
| hgu95All | – | – | – |
| hgu95Asym | – | – | – |
Topics
Depended on by (47)
Show 61 packagesHide 61 packages
Bioconductor (46)
CRAN (1)
Suggested by (226)
People
- Bioconductor Package Maintainer maintainer
- Jeff Gentry author
-
Kritika Verma
contributor
Converted chromLOC vignette from Sweave to RMarkdown / HTML.
-
Manvi Yaduvanshi
contributor
Converted useDataPkgs vignette from Sweave to RMarkdown / HTML.
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("annotate")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.